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         LogotipoUSE.png Department of Genetics
University of Seville


    UNIVERSITY OF SEVILLE       FACULTY OF BIOLOGY       IBIS       CABIMER       CITIUS       POSTGRADUATE       DOCTORATE       ENVIRONMENT       COMPLAINTS AND SUGGESTIONS

Updated: November 2022

PUBLICATIONS


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2022

Fungal Secondary Metabolism.
Avalos J,
Encyclopedia 2022, 2(1), 1-13

Special Issue: Type III Secretion Systems in Human/Animal Pathogenic Bacteria.
Bernal-Bayard J, Ramos-Morales F.
Microorganisms. 2022 Jul 20;10(7):1461.

Photobiology of the keystone genus Metarhizium.
Brancini GTP, Hallsworth JE, Corrochano LM, Braga GÚL.
J Photochem Photobiol B. 2022 Jan;226:112374.

SNRPD2 Is a Novel Substrate for the Ubiquitin Ligase Activity of the Salmonella Type III Secretion Effector SlrP.
Bullones-Bolaños A, Araujo-Garrido JL, Fernández-García J, Romero F, Bernal-Bayard J, Ramos-Morales F.
Biology (Basel). 2022 Oct 17;11(10):1517.

The NEL Family of Bacterial E3 Ubiquitin Ligases.
Bullones-Bolaños A, Bernal-Bayard J, Ramos-Morales F.
Int J Mol Sci. 2022 Jul 13;23(14):7725.

A role for the Saccharomyces cerevisiae Rtt109 histone acetyltransferase in R-loop homeostasis and associated genome instability.
Cañas JC, García-Rubio ML, García A, Antequera F, Gómez-González B, Aguilera A.
Genetics. 2022 Jul 22:iyac108.

DNA Methylation in Prokaryotes.
Casadesús J, Sánchez-Romero MA.
Adv Exp Med Biol. 2022;1389:21-43.

Transcriptional Regulation by the Velvet Protein VE-1 during Asexual Development in the Fungus Neurospora crassa.
Cea-Sánchez S, Corrochano-Luque M, Gutiérrez G, Glass NL, Cánovas D, Corrochano LM.
mBio. 2022 Aug 30;13(4):e0150522.

Broad Transcriptomic Impact of Sorafenib and Its Relation to the Antitumoral Properties in Liver Cancer Cells.
Contreras L, Rodríguez-Gil A, Muntané J, de la Cruz J.
Cancers (Basel). 2022 Feb 25;14(5):1204.

Identifying Bacterial Lineages in Salmonella by Flow Cytometry.
Fernández-Fernández R, Olivenza DR, Sánchez-Romero MA.
EcoSal Plus. 2022 Feb 11:eESP00182021

Preparing Bacterial Genomic DNA  Working with Phage P22  / Figueroa-Bossi N, Balbontín R, Bossi L.
Cold Spring Harb Protoc. 2022 Aug 5.

Pervasive transcription enhances the accessibility of H-NS-silenced promoters and generates bistability in Salmonella virulence gene expression.
Figueroa-Bossi N, Sánchez-Romero MA, Kerboriou P, Naquin D, Mendes C, Bouloc P, Casadesús J, Bossi L.
Proc Natl Acad Sci U S A. 2022 Jul 26;119(30):e2203011119.

Genetic Mining of Newly Isolated Salmophages for Phage Therapy.
Gendre J, Ansaldi M, Olivenza DR, Denis Y, Casadesús J, Ginet N.
Int J Mol Sci. 2022 Aug 10;23(16):8917.

Light regulates the degradation of the regulatory protein VE-1 in the fungus Neurospora crassa.
Gil-Sánchez MDM, Cea-Sánchez S, Luque EM, Cánovas D, Corrochano LM.
BMC Biol. 2022 Jun 27;20(1):149.

CtIP-dependent nascent RNA expression flanking DNA breaks guides the choice of DNA repair pathway.
Gómez-Cabello D, Pappas G, Aguilar-Morante D, Dinant C, Bartek J.
Nat Commun. 2022 Sep 9;13(1):5303.

Editorial: The Role of RNA in Genome Stability: To Wreck or Repair?
Gómez-González B, Dutta A, Feng W.
Front Mol Biosci. 2022 Feb 9;9:848217.



Membrane trafficking: ESCRTs act here, there, and everywhere.
Lemus L, Goder V.
Curr Biol. 2022 Mar 28;32(6):R292-R294.

Mata-Cabana A, Romero-Expósito FJ, Geibel M, Piubeli FA, Merrow M, Olmedo M.
BMC Biol. 2022 Apr 27;20(1):94.

Functions of polyamines in growth and development of Phycomyces blakesleeanus wild-type and mutant strains.
Medina HR, Morera B, Flores R, Ruiz-Herrera J, Cerdá-Olmedo E.
Fungal Biol. 2022 Jun-Jul;126(6-7):429-437.

Ribosomal protein eL39 is important for maturation of the nascent polypeptide exit tunnel and proper protein folding during translation.
Micic J, Rodríguez-Galán O, Babiano R, Fitzgerald F, Fernández-Fernández J, Zhang Y, Gao N, Woolford JL, de la Cruz J.
Nucleic Acids Res. 2022 May 27:gkac366.

Histone post-translational modifications - cause and consequence of genome function.
Millán-Zambrano G, Burton A, Bannister AJ, Schneider R.
Nat Rev Genet.
2022 Sep;23(9):563-580.

Manganese is a physiologically relevant TORC1 activator in yeast and mammals.
Nicastro R, Gaillard H, Zarzuela L, Péli-Gulli MP, Fernández-García E, Tomé M, García-Rodríguez N, Durán RV, De Virgilio C, Wellinger RE.
Elife. 2022 Jul 29;11:e80497.

FANCD2 maintains replication fork stability during misincorporation of the DNA demethylation products 5-hydroxymethyl-2'-deoxycytidine and 5-hydroxymethyl-2'-deoxyuridine.
Peña-Gómez MJ, Moreno-Gordillo P, Narmontė M, García-Calderón CB, Rukšėnaitė A, Klimašauskas S, Rosado IV.
Cell Death Dis. 2022 May 27;13(5):503.

Nucleo-cytoplasmic shuttling of RNA-binding factors: mRNA buffering and beyond.
Pérez-Ortín JE, Chávez S. Biochim Biophys Acta Gene Regul Mech. 2022 Jul;1865(5):194849.

The C-terminal tail of ribosomal protein Rps15 is engaged in cytoplasmic pre-40S maturation.
Rössler I, Weigl S, Fernández-Fernández J, Martín-Villanueva S, Strauss D, Hurt E, de la Cruz J, Pertschy B.
RNA Biol. 2022;19(1):560-574.

Relation between CarS expression and activation of carotenogenesis by stress in Fusarium fujikuroi.
Ruger-Herreros M, Nordzieke S, Vega-Álvarez C, Avalos J, Limón MC.
Front Bioeng Biotechnol. 2022 Oct 5;10:1000129.

MutSβ regulates G4-associated telomeric R-loops to maintain telomere integrity in ALT cancer cells.
Sakellariou D, Bak ST, Isik E, Barroso SI, Porro A, Aguilera A, Bartek J, Janscak P, Peña-Diaz
J.
Cell Rep. 2022 Apr 5;39(1):110602.

Identification of an acetyl esterase in the supernatant of the environmental strain Bacillus sp. HR21-6.
Sánchez-Barrionuevo L, Mateos J, Fernández-Puente P, Begines P, Fernández-Bolaños JG, Gutiérrez G, Cánovas D, Mellado E.
Biochimie. 2022 Mar 17;198:48-59.

Topoisomerase 1-dependent R-loop deficiency drives accelerated replication and genomic instability.
Sarni D, Barroso S, Shtrikman A, Irony-Tur Sinai M, Oren YS, Aguilera A, Kerem B. Cell Rep. 2022 Sep 27;40(13):111397.

RNase H1 Hybrid-Binding Domain-Based Tools for Cellular Biology Studies of DNA-RNA Hybrids in Mammalian Cells.
Silva S, Guillén-Mendoza C, Aguilera A. Methods Mol Biol. 2022;2528:115-125.

A new challenge for data analytics: transposons.
Wellinger RE, Aguilar-Ruiz JS.
BioData Min. 2022 Mar 25;15(1):9.


 


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2021

Detection of DNA Double-Strand Breaks by γ-H2AX Immunodetection.
Barroso SI, Aguilera A.
Methods Mol Biol. 2021;2153:1-8.

The SWI/SNF chromatin remodeling complex helps resolve R-loop-mediated transcription-replication conflicts.
Bayona-Feliu A, Barroso S, Muñoz S, Aguilera A.
Nat Genet. 2021 Jul;53(7):1050-1063.

The role of chromatin at transcription-replication conflicts as a genome safeguard.
Bayona-Feliu A, Aguilera A.
Biochem Soc Trans. 2021 Dec 17;49(6):2727-2736.

The SWI/SNF complex, transcription-replication conflicts and cancer: a connection with high therapeutic potential.
Bayona-Feliu A, Aguilera A.
Mol Cell Oncol. 2021 Sep 23;8(4):1976582.

Xrn1 influence on gene transcription results from the combination of general effects on elongating RNA pol II and gene-specific chromatin configuration.
Begley V, Jordán-Pla A, Peñate X, Garrido-Godino AI, Challal D, Cuevas-Bermúdez A, Mitjavila A, Barucco M, Gutiérrez G, Singh A, Alepuz P, Navarro F, Libri D, Pérez-Ortín JE, Chávez S.
RNA Biol. 2021 Sep;18(9):1310-1323.

The Effect of Atypical Nucleic Acids Structures in DNA Double Strand Break Repair: A Tale of R-loops and G-Quadruplexes.
Camarillo R, Jimeno S, Huertas P.
Front Genet. 2021 Oct 8;12:742434.

Generation of Random luxCDABE Transcriptional Fusions in the Genome of Salmonella enterica.
de la Rosa-Altura JJ, Benesova B, Panadero-Medianero C, Amador-Álvarez A, Aguilera-Herce J, Araujo-Garrido JL, Bernal-Bayard J, Ramos-Morales F.
Methods Mol Biol. 2021;2182:141-151.

Coupling Between Cell Cycle Progression and the Nuclear RNA Polymerases System.
Delgado-Román I, Muñoz-Centeno MC.
Front Mol Biosci. 2021 Aug 2;8:691636.

An Evolutionary Perspective of the Lipocalin Protein Family.
Diez-Hermano S, Ganfornina MD, Skerra A, Gutiérrez G, Sanchez D.
Front Physiol. 2021 Aug 23;12:718983.

An arsRB resistance operon confers tolerance to arsenite in the environmental isolate Terribacillus sp. AE2B 122.
Escobar-Niño A, Sánchez-Barrionuevo L, Torres-Torres JM, Clemente R, Gutiérrez G, Mellado E, Cánovas D.
FEMS Microbiol Ecol. 2021 Mar 8;97(3):fiab015.

Evidence for Involvement of the Salmonella enterica Z-Ring Assembly Factors ZapA and ZapB in Resistance to Bile.
Fernández-Fernández R, Hernández SB, Puerta-Fernández E, Sánchez-Romero MA, Urdaneta V, Casadesús J.
Front Microbiol. 2021 Feb 25;12:647305.

Evidence for an arginine-dependent route for the synthesis of NO in the model filamentous fungus Aspergillus nidulans.
Franco-Cano A, Marcos AT, Strauss J, Cánovas D.
Environ Microbiol. 2021 Nov;23(11):6924-6939.

Origin matters: spontaneous DNA-RNA hybrids do not form in trans as a source of genome instability.
Gómez-González B, Aguilera A.
Curr Genet. 2021 Feb;67(1):93-97.

A new interaction between BRCA2 and DDX5 promotes the repair of DNA breaks at transcribed chromatin.
Gómez-González B, Sessa G, Carreira A, Aguilera A.
Mol Cell Oncol. 2021 Apr 14;8(3):1910474.

Detection of DSBs in C. elegans Meiosis.
García-Muse T.
Methods Mol Biol. 2021;2153:287-293.

Redox controls RecA protein activity via reversible oxidation of its methionine residues.
Henry C, Loiseau L, Vergnes A, Vertommen D, Mérida-Floriano A, Chitteni-Pattu S, Wood EA, Casadesús J, Cox MM, Barras F, Ezraty B.
Elife. 2021 Feb 19;10:e63747.

Topoisomerase IIα represses transcription by enforcing promoter-proximal pausing.
Herrero-Ruiz A, Martínez-García PM, Terrón-Bautista J, Millán-Zambrano G, Lieberman JA, Jimeno-González S, Cortés-Ledesma F.
Cell Rep. 2021 Apr 13;35(2):108977.

Association of snR190 snoRNA chaperone with early pre-60S particles is regulated by the RNA helicase Dbp7 in yeast.
Jaafar M, Contreras J, Dominique C, Martín-Villanueva S, Capeyrou R, Vitali P, Rodríguez-Galán O, Velasco C, Humbert O, Watkins NJ, Villalobo E, Bohnsack KE, Bohnsack MT, Henry Y, Merhi RA, de la Cruz J, Henras AK.
Nat Commun. 2021 Oct 22;12(1):6153.

The Emerging Role of RNA Modifications in DNA Double-Strand Break Repair.
Jimeno S, Balestra FR, Huertas P.
Front Mol Biosci. 2021 Apr 29;8:664872.

ADAR-mediated RNA editing of DNA:RNA hybrids is required for DNA double strand break repair.
Jimeno S, Prados-Carvajal R, Fernández-Ávila MJ, Silva S, Silvestris DA, Endara-Coll M, Rodríguez-Real G, Domingo-Prim J, Mejías-Navarro F, Romero-Franco A, Jimeno-González S, Barroso S, Cesarini V, Aguilera A, Gallo A, Visa N, Huertas P. Nat Commun. 2021 Sep 17;12(1):5512. doi: 10.1038/s41467-021-25790-2.


The human nucleoporin Tpr protects cells from RNA-mediated replication stress.
Kosar M, Giannattasio M, Piccini D, Maya-Mendoza A, García-Benítez F, Bartkova J, Barroso SI, Gaillard H, Martini E, Restuccia U, Ramirez-Otero MA, Garre M, Verga E, Andújar-Sánchez M, Maynard S, Hodny Z, Costanzo V, Kumar A, Bachi A, Aguilera A, Bartek J, Foiani M.
Nat Commun. 2021 Jun 24;12(1):3937.

Pep4-dependent microautophagy is required for post-ER degradation of GPI-anchored proteins.
Lemus L, Goder V.
Autophagy. 2021 Sep 7:1-3.

Post-ER degradation of misfolded GPI-anchored proteins is linked with microautophagy.
Lemus L, Matić Z, Gal L, Fadel A, Schuldiner M, Goder V.
Curr Biol. 2021 Sep 27;31(18):4025-4037.e5.

Ubiquitin and Ubiquitin-Like Proteins and Domains in Ribosome Production and Function: Chance or Necessity?
Martín-Villanueva S, Gutiérrez G, Kressler D, de la Cruz J.
Int J Mol Sci. 2021 Apr 22;22(9):4359.

Nutritional control of postembryonic development progression and arrest in Caenorhabditis elegans.
Mata-Cabana A, Pérez-Nieto C, Olmedo M.
Adv Genet. 2021;107:33-87.

Genome-Wide Identification and Expression Analysis of SOS Response Genes in Salmonella enterica Serovar Typhimurium.
Mérida-Floriano A, Rowe WPM, Casadesús J.
Cells. 2021 Apr 19;10(4):943.

Heterogeneity of DNA damage incidence and repair in different chromatin contexts.
Ortega P, Gómez-González B, Aguilera A.
DNA Repair (Amst). 2021 Nov;107:103210.

DNA-RNA hybrids at DSBs interfere with repair by homologous recombination.
Ortega P, Mérida-Cerro JA, Rondón AG, Gómez-González B, Aguilera A.
Elife. 2021 Jul 8;10:e69881.

Impact of the White Collar Photoreceptor WcoA on the Fusarium fujikuroi Transcriptome.
Pardo-Medina J, Gutiérrez G, Limón MC, Avalos J.
Front Microbiol. 2021 Jan 18;11:619474.

The carP lncRNA Is a carS-Related Regulatory Element with Broad Effects on the Fusarium fujikuroi Transcriptome.
Pardo-Medina J, Gutiérrez G, Limón MC, Avalos J.
Noncoding RNA. 2021 Aug 2;7(3):46.

Human prefoldin modulates co-transcriptional pre-mRNA splicing.
Payán-Bravo L, Fontalva S, Peñate X, Cases I, Guerrero-Martínez JA, Pareja-Sánchez Y, Odriozola-Gil Y, Lara E, Jimeno-González S, Suñé C, Muñoz-Centeno MC, Reyes JC, Chávez S.
Nucleic Acids Res. 2021 Jun 21;49(11):6267-6280.

Neuronal perception of the social environment generates an inherited memory that controls the development and generation time of C. elegans.
Perez MF, Shamalnasab M, Mata-Cabana A, Della Valle S, Olmedo M, Francesconi M, Lehner B.
Curr Biol. 2021 Oct 11;31(19):4256-4268.e7.

MRGBP, a member of the NuA4 complex, inhibits DNA double-strand break repair.
Rivero S, Rodríguez-Real G, Marín I, Huertas P.
FEBS Open Bio. 2021 Mar;11(3):622-632.

A functional connection between translation elongation and protein folding at the ribosome exit tunnel in Saccharomyces cerevisiae.
Rodríguez-Galán O, García-Gómez JJ, Rosado IV, Wei W, Méndez-Godoy A, Pillet B, Alekseenko A, Steinmetz LM, Pelechano V, Kressler D, de la Cruz J.
Nucleic Acids Res. 2021 Jan 11;49(1):206-220.

The p24 Complex Contributes to Specify Arf1 for COPI Coat Selection.
Sabido-Bozo S, Perez-Linero AM, Manzano-Lopez J, Rodriguez-Gallardo S, Aguilera-Romero A, Cortes-Gomez A, Lopez S, Wellinger RE, Muñiz M.
Int J Mol Sci. 2021 Jan 3;22(1):423.

Harmful R-loops are prevented via different cell cycle-specific mechanisms.
San Martin-Alonso M, Soler-Oliva ME, García-Rubio M, García-Muse T, Aguilera A.
Nat Commun. 2021 Jul 22;12(1):4451.

Waddington's Landscapes in the Bacterial World.
Sánchez-Romero MA, Casadesús J.
Front Microbiol. 2021 Jun 4;12:685080.

Single Cell Analysis of Bistable Expression of Pathogenicity Island 1 and the Flagellar Regulon in Salmonella enterica.
Sánchez-Romero MA, Casadesús J.
Microorganisms. 2021 Jan 20;9(2):210.

The Sister-Chromatid Exchange Assay in Human Cells.
Tumini E, Aguilera A.
Methods Mol Biol. 2021;2153:383-393.

THSC/TREX-2 deficiency causes replication stress and genome instability in Caenorhabditis elegans.
Zheleva A, Camino LP, Fernández-Fernández N, García-Rubio M, Askjaer P, García-Muse T, Aguilera A.
J Cell Sci. 2021 Oct 15;134(20):jcs258435

 


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2020

PHF2 regulates homology-directed DNA repair by controlling the resection of DNA double strand breaks.
Alonso-de Vega I, Paz-Cabrera MC, Rother MB, Wiegant WW, Checa-Rodríguez C, Hernández-Fernaud JR, Huertas P, Freire R, van Attikum H, Smits VAJ.
Nucleic Acids Res. 2020 May 21;48(9):4915-4927.

Tubulin Folding Cofactor TBCB is a Target of the Salmonella Effector Protein SseK1.
Araujo-Garrido JL, Baisón-Olmo F, Bernal-Bayard J, Romero F, Ramos-Morales F.
Int J Mol Sci. 2020 Apr 30;21(9):E3193.

Type III Secretion Effectors with Arginine N-Glycosyltransferase Activity.
Araujo-Garrido JL, Bernal-Bayard J, Ramos-Morales F.
Microorganisms. 2020 Mar 2;8(3):357.

Preparation of a radiobiology beam line at the 18 MeV proton cyclotron facility at CNA.
Baratto-Roldán A, Jiménez-Ramos MDC, Jimeno S, Huertas P, García-López J, Gallardo MI, Cortés-Giraldo MA, Espino JM.
Phys Med. 2020 Jun;74:19-29.
 
Overexpression of budding yeast protein phosphatase Ppz1 impairs translation.
Calafí C, López-Malo M, Velázquez D, Zhang C, Fernández-Fernández J, Rodríguez-Galán O, de la Cruz J, Ariño J, Casamayor A.
Biochim Biophys Acta Mol Cell Res. 2020 Aug;1867(8):118727.

Methylation of the central transcriptional regulator KLF4 by PRMT5 is required for DNA end resection and recombination.
Checa-Rodríguez C, Cepeda-García C, Ramón J, López-Saavedra A, Balestra FR, Domínguez-Sánchez MS, Gómez-Cabello D, Huertas P.
DNA Repair (Amst). 2020 Oct;94:102902.

Generation of Random luxCDABE Transcriptional Fusions in the Genome of Salmonella enterica.
de la Rosa-Altura JJ, Benesova B, Panadero-Medianero C, Amador-Álvarez A, Aguilera-Herce J, Araujo-Garrido JL, Bernal-Bayard J, Ramos-Morales F.
Methods Mol Biol. 2021;2182:141-151.

TDP-43 mutations link Amyotrophic Lateral Sclerosis with R-loop homeostasis and R loop-mediated DNA damage.
Giannini M, Bayona-Feliu A, Sproviero D, Barroso SI, Cereda C, Aguilera A. PLoS Genet. 2020 Dec 10;16(12):e1009260.

Lipids and their (un)known effects on ER-associated protein degradation (ERAD).
Goder V, Alanis-Dominguez E, Bustamante-Sequeiros M.
Biochim Biophys Acta Mol Cell Biol Lipids. 2020 Jan;1865(1). pii: S1388-1981(19)30117-9.

Looping the (R) Loop in DSB Repair via RNA Methylation.
Gómez-González B, Aguilera A.
Mol Cell. 2020 Aug 6;79(3):361-362.

Spontaneous DNA-RNA hybrids: differential impacts throughout the cell cycle.
Gómez-González B, Barroso S, Herrera-Moyano E, Aguilera A.
Cell Cycle. 2020 Mar;19(5):525-531.

Histone deacetylases facilitate the accurate repair of broken forks.
Gómez-González B, Ortega P, Aguilera A.
Mol Cell Oncol. 2020 Jan 13;7(2):1705731.

Harmful DNA:RNA hybrids are formed in cis and in a Rad51-independent manner.
Lafuente-Barquero J, García-Rubio ML, Martin-Alonso MS, Gómez-González B, Aguilera A.
Elife. 2020 Aug 4;9:e56674.

Metallo-Liposomes of Ruthenium Used as Promising Vectors of Genetic Material.
Lebrón JA, Ostos FJ, López-López M, Moyá ML, Sales C, García E, García-Calderón CB, García-Calderón M, Peña-Gómez MJ, Rosado IV, Balestra FR, Huertas P, López-Cornejo P.
Pharmaceutics. 2020 May 25;12(5):482.

The THO Complex as a Paradigm for the Prevention of Cotranscriptional R-Loops.
Luna R, Rondón AG, Pérez-Calero C, Salas-Armenteros I, Aguilera A.
Cold Spring Harb Symp Quant Biol. 2019;84:105-114.

Functional Characterization of Lysophosphatidylcholine: Acyl-CoA Acyltransferase Genes From Sunflower (Helianthus annuus L.).
Mapelli-Brahm A, Sánchez R, Pan X, Moreno-Pérez AJ, Garcés R, Martínez-Force E, Weselake RJ, Salas JJ, Venegas-Calerón M.
Front Plant Sci. 2020 Apr 15;11:403.

Nitric oxide homeostasis is required for light-dependent regulation of conidiation in Aspergillus.
Marcos AT, Ramos MS, Schinko T, Strauss J, Cánovas D.
Fungal Genet Biol. 2020 Apr;137:103337.

Modulation of Activity of a Carotenoid Pathway Through the Use of the TeT-on Regulatory System: Application in the Fungus Fusarium fujikuroi.
Marente J, Ortega P, Pardo-Medina J, Avalos J, Limón MC.
Methods Mol Biol. 2020;2083:343-360.

Role of the 40S beak ribosomal protein eS12 in ribosome biogenesis and function in Saccharomyces cerevisiae.
Martín-Villanueva S, Fernández-Fernández J, Rodríguez-Galán O, Fernández-Boraita J, Villalobo E, de La Cruz J.
RNA Biol. 2020 Sep;17(9):1261-1276.

Ubiquitin release from eL40 is required for cytoplasmic maturation and function of 60S ribosomal subunits in Saccharomyces cerevisiae.
Martín-Villanueva S, Fernández-Pevida A, Fernández-Fernández J, Kressler D, de la Cruz J.
FEBS J. 2020 Jan;287(2):345-360.

Prefoldin-like Bud27 influences the transcription of ribosomal components and ribosome biogenesis in Saccharomyces cerevisiae.
Martínez-Fernández V, Cuevas-Bermúdez A, Gutiérrez-Santiago F, Garrido-Godino AI, Rodríguez-Galán O, Jordán-Pla A, Lois S, Triviño JC, de la Cruz J, Navarro F.
RNA. 2020 Oct;26(10):1360-1379.

Social Chemical Communication Determines Recovery From L1 Arrest via DAF-16 Activation.
Mata-Cabana A, Gómez-Delgado L, Romero-Expósito FJ, Rodríguez-Palero MJ, Artal-Sanz M, Olmedo M.
Front Cell Dev Biol. 2020 Nov 10;8:588686.

Aging during C. elegans L1 quiescence.
Mata-Cabana A, Romero-Expósito FJ, Olmedo M.
Aging (Albany NY). 2020 Sep 27;12(18):17756-17758.
 
ALC1/eIF4A1-mediated regulation of CtIP mRNA stability controls DNA end resection.
Mejías-Navarro F, Rodríguez-Real G, Ramón J, Camarillo R, Huertas P.
PLoS Genet. 2020 May 11;16(5):e1008787.

The DASH-type Cryptochrome from the Fungus Mucor circinelloides Is a Canonical CPD-Photolyase.
Navarro E, Niemann N, Kock D, Dadaeva T, Gutiérrez G, Engelsdorf T, Kiontke S, Corrochano LM, Batschauer A, Garre V.
Curr Biol. 2020 Nov 16;30(22):4483-4490.e4.
 
Epigenetic biosensors for bacteriophage detection and phage receptor discrimination.
Olivenza DR, Casadesús J, Ansaldi M.
Environ Microbiol. 2020 Aug;22(8):3126-3142.

Prolonged quiescence delays somatic stem cell-like divisions in Caenorhabditis elegans and is controlled by insulin signaling.
Olmedo M, Mata-Cabana A, Jesús Rodríguez-Palero M, García-Sánchez S, Fernández-Yañez A, Merrow M, Artal-Sanz M.
Aging Cell. 2020 Feb;19(2):e13085.

Canonical non-homologous end-joining promotes genome mutagenesis and translocations induced by transcription-associated DNA topoisomerase 2 activity.
Olmedo-Pelayo J, Rubio-Contreras D, Gómez-Herreros F.
Nucleic Acids Res. 2020 Sep 18;48(16):9147-9160.

Histone H3E73Q and H4E53A mutations cause recombinogenic DNA damage.
Ortega P, García-Pichardo D, San Martin-Alonso M, Rondón AG, Gómez-González B, Aguilera A.
Microb Cell. 2020 Apr 24;7(7):190-198.

Homologous recombination and Mus81 promote replication completion in response to replication fork blockage.
Pardo B, Moriel-Carretero M, Vicat T, Aguilera A, Pasero P.
EMBO Rep. 2020 Jul 3;21(7):e49367.

Neurosporaxanthin Overproduction by Fusarium fujikuroi and Evaluation of Its Antioxidant Properties.
Parra-Rivero O, Barros MP, Prado MDM, Gil JV, Hornero-Méndez D, Zacarías L, Rodrigo MJ, Limón MC, Avalos J.
Antioxidants (Basel). 2020 Jun 16;9(6):528.

A novel lncRNA as a positive regulator of carotenoid biosynthesis in Fusarium.
Parra-Rivero O, Pardo-Medina J, Gutiérrez G, Limón MC, Avalos J.
Sci Rep. 2020;10(1):678.

UAP56/DDX39B is a major cotranscriptional RNA-DNA helicase that unwinds harmful R loops genome-wide.
Pérez-Calero C, Bayona-Feliu A, Xue X, Barroso SI, Muñoz S, González-Basallote VM, Sung P, Aguilera A.
Genes Dev. 2020 Jul 1;34(13-14):898-912.

A guiding torch at the poles: the multiple roles of spindle microtubule-organizing centers during cell division.
Rincón AM, Monje-Casas F.
Cell Cycle. 2020 Jun;19(12):1405-1421.

Conidiation in Neurospora crassa: vegetative reproduction by a model fungus.
Ruger-Herreros C, Corrochano LM.
Int Microbiol. 2020 Jan;23(1):97-105.

The bacterial epigenome.
Sánchez-Romero MA, Casadesús J.
Nat Rev Microbiol. 2020 Jan;18(1):7-20.

Copy Number Heterogeneity in the Virulence Plasmid of Salmonella enterica.
Sánchez-Romero MA, Mérida-Floriano Á, Casadesús J.
Front Microbiol. 2020 Dec 4;11:599931.

Contribution of DNA adenine methylation to gene expression heterogeneity in Salmonella enterica.
Sánchez-Romero MA, Olivenza DR, Gutiérrez G, Casadesús J.
Nucleic Acids Res. 2020 Dec 2;48(21):11857-11867.

Light regulates a Phycomyces blakesleeanus gene family similar to the carotenogenic repressor gene of Mucor circinelloides.
Tagua VG, Navarro E, Gutiérrez G, Garre V, Corrochano LM.
Fungal Biol. 2020 May;124(5):338-351.

Studying DNA Double-Strand Break Repair: An Ever-Growing Toolbox.
Vítor AC, Huertas P, Legube G, de Almeida SF.
Front Mol Biosci. 2020 Feb 21;7:24.


 


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2019

A Live Salmonella Vaccine Delivering PcrV through the Type III Secretion System Protects against Pseudomonas aeruginosa.
Aguilera-Herce J, García-Quintanilla M, Romero-Flores R, McConnell MJ, Ramos-Morales F.
mSphere. 2019 Apr 17;4(2). pii: e00116-19. doi: 10.1128/mSphere.00116-19.

Apocarotenoids produced from β-carotene by dioxygenases from Mucor circinelloides.
Alcalde E, Cerdá-Olmedo E, Al-Babili S.
Microbiology. 2019 Apr;165(4):433-438.

Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants.
Álvarez-Escribano I, Sasse C, Bok JW, Na H, Amirebrahimi M, Lipzen A, Schackwitz W, Martin J, Barry K, Gutiérrez G, Cea-Sánchez S, Marcos AT, Grigoriev IV, Keller NP, Braus GH, Cánovas D.
BMC Biol. 2019 Nov 11;17(1):88.

The DNA damage response acts as a safeguard against harmful DNA-RNA hybrids of different origins.
Barroso S, Herrera-Moyano E, Muñoz S, García-Rubio M, Gómez-González B, Aguilera A.
EMBO Rep. 2019 Sep;20(9):e47250.

Control of Development, Secondary Metabolism and Light-Dependent Carotenoid Biosynthesis by the Velvet Complex of Neurospora crassa.
Bayram ÖS, Dettmann A, Karahoda B, Moloney NM, Ormsby T, McGowan J, Cea-Sánchez S, Miralles-Durán A, Brancini GTP, Luque EM, Fitzpatrick DA, Cánovas D, Corrochano LM, Doyle S, Selker EU, Seiler S, Bayram Ö.
Genetics. 2019 Jul;212(3):691-710.

The mRNA degradation factor Xrn1 regulates transcription elongation in parallel to Ccr4.
Begley V, Corzo D, Jordán-Pla A, Cuevas-Bermúdez A, Miguel-Jiménez L, Pérez-Aguado D, Machuca-Ostos M, Navarro F, Chávez MJ, Pérez-Ortín JE, Chávez S.
Nucleic Acids Res. 2019 Oct 10;47(18):9524-9541.

Measurement of Phototropism of the Sporangiophore of Phycomyces blakesleeanus.
Corrochano LM, Galland P.
Methods Mol Biol. 2019;1924:63-81.

Light in the Fungal World: From Photoreception to Gene Transcription and Beyond.
Corrochano LM.
Annu Rev Genet. 2019 Dec 3;53:149-170.

Hybrid in silico/in vitro target fishing to assign function to "orphan" compounds of food origin - The case of the fungal metabolite atromentin.
Dellafiora L, Aichinger G, Geib E, Sánchez-Barrionuevo L, Brock M, Cánovas D, Dall'Asta C, Marko D.
Food Chem. 2019 Jan 1;270:61-69.

EXOSC10 is required for RPA assembly and controlled DNA end resection at DNA double-strand breaks.
Domingo-Prim J, Endara-Coll M, Bonath F, Jimeno S, Prados-Carvajal R, Friedländer MR, Huertas P, Visa N.
Nat Commun. 2019 May 13;10(1):2135.

Transcriptional regulation of the Salmonella enterica std fimbrial operon by the RcsCDB system.
Farizano JV, García-Pastor L, Casadesús J, Delgado MA.
Microbiology. 2019 Nov;165(11):1245-1250.

The Nup84 complex coordinates the DNA damage response to warrant genome integrity.
Gaillard H, Santos-Pereira JM, Aguilera A.
Nucleic Acids Res. 2019 May 7;47(8):4054-4067.

R Loops: From Physiological to Pathological Roles.
García-Muse T, Aguilera A.
Cell. 2019 Oct 17;179(3):604-618.

A Meiotic Checkpoint Alters Repair Partner Bias to Permit Inter-sister Repair of Persistent DSBs.
Garcia-Muse T, Galindo-Diaz U, Garcia-Rubio M, Martin JS, Polanowska J, O'Reilly N, Aguilera A, Boulton SJ.
Cell Rep. 2019 Jan 15;26(3):775-787.e5.

Bistability and phase variation in Salmonella enterica.
García-Pastor L, Puerta-Fernández E, Casadesús J.
Biochim Biophys Acta Gene Regul Mech. 2019 Jul;1862(7):752-758.

Regulation of bistability in the std fimbrial operon of Salmonella enterica by DNA adenine methylation and transcription factors HdfR, StdE and StdF.
García-Pastor L, Sánchez-Romero MA, Jakomin M, Puerta-Fernández E, Casadesús J.
Nucleic Acids Res. 2019 Sep 5;47(15):7929-7941.

Transcription-mediated replication hindrance: a major driver of genome instability.
Gómez-González B, Aguilera A.
Genes Dev. 2019 Aug 1;33(15-16):1008-1026.

DNA Double Strand Breaks and Chromosomal Translocations Induced by DNA Topoisomerase II.
Gómez-Herreros F.
Front Mol Biosci. 2019 Dec 10;6:141.

Functional characterization and structural modelling of Helianthus annuus (sunflower) ketoacyl-CoA synthases and their role in seed oil composition.
González-Mellado D, Salas JJ, Venegas-Calerón M, Moreno-Pérez AJ, Garcés R, Martínez-Force E.
Planta. 2019 Jun;249(6):1823-1836.

Controlling the balance between chromosome break repair pathways.
Jimeno S, Mejías-Navarro F, Prados-Carvajal R, Huertas P.
Adv Protein Chem Struct Biol. 2019;115:95-134.

The role of RNA and RNA-related proteins in the regulation of DNA double strand break repair pathway choice.
Jimeno S, Prados-Carvajal R, Huertas P.
DNA Repair (Amst). 2019 Sep;81:102662.

The Ubiquitin Moiety of Ubi1 Is Required for Productive Expression of Ribosomal Protein eL40 in Saccharomyces cerevisiae.
Martín-Villanueva S, Fernández-Pevida A, Kressler D, de la Cruz J.
Cells. 2019 Aug 7;8(8).

A portable epigenetic switch for bistable gene expression in bacteria.
Olivenza DR, Nicoloff H, Antonia Sánchez-Romero M, Cota I, Andersson DI, Casadesús J.
Sci Rep. 2019 Aug 2;9(1):11261.

Rpd3L and Hda1 histone deacetylases facilitate repair of broken forks by promoting sister chromatid cohesion.
Ortega P, Gómez-González B, Aguilera A.
Nat Commun. 2019 Nov 15;10(1):5178.

Pol5 is an essential ribosome biogenesis factor required for 60S ribosomal subunit maturation in Saccharomyces cerevisiae.
Ramos-Sáenz A, González-Álvarez D, Rodríguez-Galán O, Rodríguez-Gil A, Gaspar SG, Villalobo E, Dosil M, de la Cruz J.
RNA. 2019 Nov;25(11):1561-1575.

What causes an RNA-DNA hybrid to compromise genome integrity?
Rondón AG, Aguilera A.
DNA Repair (Amst). 2019 Sep;81:102660.

R-Loops as Promoters of Antisense Transcription.
Rondón AG, Aguilera A.
Mol Cell. 2019 Nov 21;76(4):529-530.

Comparative transcriptomic analysis unveils interactions between the regulatory CarS protein and light response in Fusarium.
Ruger-Herreros M, Parra-Rivero O, Pardo-Medina J, Romero-Campero FJ, Limón MC, Avalos J.
BMC Genomics. 2019 Jan 21;20(1):67.

Depletion of the MFAP1/SPP381 Splicing Factor Causes R-Loop-Independent Genome Instability.
Salas-Armenteros I, Barroso SI, Rondón AG, Pérez M, Andújar E, Luna R, Aguilera A.
Cell Rep. 2019 Aug 6;28(6):1551-1563.

Control of Development, Secondary Metabolism and Light-Dependent Carotenoid Biosynthesis by the Velvet Complex of Neurospora crassa.
Sarikaya Bayram Ö, Dettmann A, Karahoda B, Moloney NM, Ormsby T, McGowan J, Cea-Sánchez S, Miralles-Durán A, Brancini GTP, Luque EM, Fitzpatrick DA, Cánovas D, Corrochano LM, Doyle S, Selker EU, Seiler S, Bayram Ö.
Genetics. 2019 May 8. pii: genetics.302277.2019.

Std fimbriae-fucose interaction increases Salmonella-induced intestinal inflammation and prolongs colonization.
Suwandi A, Galeev A, Riedel R, Sharma S, Seeger K, Sterzenbach T, García Pastor L, Boyle EC, Gal-Mor O, Hensel M, Casadesús J, Baines JF, Grassl GA.
PLoS Pathog. 2019 Jul 22;15(7):e1007915.

The antitumor drugs trabectedin and lurbinectedin induce transcription-dependent replication stress and genome instability.
Tumini E, Herrera-Moyano E, San Martín-Alonso M, Barroso S, Galmarini CM, Aguilera A.
Mol Cancer Res. 2019 Mar;17(3):773-782.

Mutational and non mutational adaptation of Salmonella enterica to the gall bladder.
Urdaneta V, Hernández SB, Casadesús J.
Sci Rep. 2019 Mar 26;9(1):5203.

A New Species of the γ-Proteobacterium Francisella, F. adeliensis Sp. Nov., Endocytobiont in an Antarctic Marine Ciliate and Potential Evolutionary Forerunner of Pathogenic Species.
Vallesi A, Sjödin A, Petrelli D, Luporini P, Taddei AR, Thelaus J, Öhrman C, Nilsson E, Di Giuseppe G, Gutiérrez G, Villalobo E.
Microb Ecol. 2019 Apr;77(3):587-596.

Simple, fast and accurate method for the determination of glycogen in the model unicellular cyanobacterium Synechocystis sp. PCC 6803.
Vidal R, Venegas-Calerón M.
J Microbiol Methods. 2019 Sep;164:105686.

Mind the nick.
Wellinger RE.
Cell Cycle. 2019 Jan;18(1):115-117.

Elongation Factor TFIIS Prevents Transcription Stress and R-Loop Accumulation to Maintain Genome Stability.
Zatreanu D, Han Z, Mitter R, Tumini E, Williams H, Gregersen L, Dirac-Svejstrup AB, Roma S, Stewart A, Aguilera A, Svejstrup JQ.
Mol Cell. 2019 Oct 3;76(1):57-69.e9.




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2018

Protein Activity of the Fusarium fujikuroi Rhodopsins CarO and OpsA and Their Relation to Fungus-Plant Interaction.
Adam A, Deimel S, Pardo-Medina J, García-Martínez J, Konte T, Limón MC, Avalos J, Terpitz U.
Int J Mol Sci. 2018 Jan 11;19(1). pii: E215.

Transcriptional basis of enhanced photoinduction of carotenoid biosynthesis at low temperature in the fungus Neurospora crassa.
Castrillo M, Luque EM, Pardo-Medina J, Limón MC, Corrochano LM, Avalos J.
Res Microbiol. 2018 Feb - Mar;169(2):78-89.

Epigenetic features of human telomeres.
Cubiles MD, Barroso S, Vaquero-Sedas MI, Enguix A, Aguilera A, Vega-Palas MA.
Nucleic Acids Res. 2018 Mar 16;46(5):2347-2355.

Feedback regulation of ribosome assembly.
de la Cruz J, Gómez-Herreros F, Rodríguez-Galán O, Begley V, de la Cruz Muñoz-Centeno M, Chávez S.
Curr Genet. 2018 Apr;64(2):393-404.

Multiple signaling kinases target Mrc1 to prevent genomic instability triggered by transcription-replication conflicts.
Duch A, Canal B, Barroso SI, García-Rubio M, Seisenbacher G, Aguilera A, de Nadal E, Posas F.
Nat Commun. 2018 Jan 25;9(1):379.

Ribosomal protein L14 contributes to the early assembly of 60S ribosomal subunits in Saccharomyces cerevisiae.
Espinar-Marchena F, Rodríguez-Galán O, Fernández-Fernández J, Linnemann J, de la Cruz J.
Nucleic Acids Res. 2018 May 18;46(9):4715-4732.

Genotoxicity of tetrahydrofolic acid to hematopoietic stem and progenitor cells.
García-Calderón CB, Bejarano-García JA, Tinoco-Gago I, Castro MJ, Moreno-Gordillo P, Piruat JI, Caballero-Velázquez T, Pérez-Simón JA, Rosado IV.
Cell Death Differ. 2018 Nov;25(11):1967-1979.

Formation of phenotypic lineages in Salmonella enterica by a pleiotropic fimbrial switch.
García-Pastor L, Sánchez-Romero MA, Gutiérrez G, Puerta-Fernández E, Casadesús J.
PLoS Genet. 2018 Sep 25;14(9):e1007677.

Yra1-bound RNA-DNA hybrids cause orientation-independent transcription-replication collisions and telomere instability.
García-Rubio M, Aguilera P, Lafuente-Barquero J, Ruiz JF, Simon MN, Geli V, Rondón AG, Aguilera A.
Genes Dev. 2018 Jul 1;32(13-14):965-977.

Detection of DNA-RNA Hybrids In Vivo.
García-Rubio M, Barroso SI, Aguilera A.
Methods Mol Biol. 2018;1672:347-361.

HPLC Analysis of Carotenoids in Neurosporaxanthin-Producing Fungi.
Hornero-Méndez D, Limón MC, Avalos J.
Methods Mol Biol. 2018;1852:269-281.

Single Molecule Analysis of Resection Tracks.
Huertas P, Cruz-García A.
Methods Mol Biol. 2018;1672:147-154.

The Helicase PIF1 Facilitates Resection over Sequences Prone to Forming G4 Structures.
Jimeno S, Camarillo R, Mejías-Navarro F, Fernández-Ávila MJ, Soria-Bretones I, Prados-Carvajal R, Huertas P.
Cell Rep. 2018 Sep 18;24(12):3262-3273.e4.

Importance of hydrophobic interactions in the single-chained cationic surfactant-DNA complexation.
López-López M, López-Cornejo P, Martín VI, Ostos FJ, Checa-Rodríguez C, Prados-Carvajal R, Lebrón JA, Huertas P, Moyá ML.
J Colloid Interface Sci. 2018 Jul 1;521:197-205.

Evolution of asexual and sexual reproduction in the aspergilli.
Ojeda-López M, Chen W, Eagle CE, Gutiérrez G, Jia WL, Swilaiman SS, Huang Z, Park HS, Yu JH, Cánovas D, Dyer PS.
Stud Mycol. 2018 Sep;91:37-59.

Glucose sensing and light regulation: A mutation in the glucose sensor RCO-3 modifies photoadaptation in Neurospora crassa.
Olmedo M, Roenneberg T, Merrow M, Corrochano LM.
Fungal Biol. 2018 Jun;122(6):497-504. doi: 10.1016/j.funbio.2017.10.004. Epub 2017 Nov 4.

Functional Contributions of Prefoldin to Gene Expression.
Payán-Bravo L, Peñate X, Chávez S.
Adv Exp Med Biol. 2018;1106:1-10.

Multiple roles of the splicing complex SF3B in DNA end resection and homologous recombination.
Prados-Carvajal R, López-Saavedra A, Cepeda-García C, Jimeno S, Huertas P.
DNA Repair (Amst). 2018 Apr 22;66-67:11-23.

A global perspective on carotenoids: Metabolism, biotechnology, and benefits for nutrition and health.
Rodriguez-Concepcion M, Avalos J, Bonet ML, Boronat A, Gomez-Gomez L, Hornero-Mendez D, Limon MC, Meléndez-Martínez AJ, Olmedilla-Alonso B, Palou A, Ribot J, Rodrigo MJ, Zacarias L, Zhu C.
Prog Lipid Res. 2018 Apr 19;70:62-93.

An automated method for the analysis of food intake behaviour in Caenorhabditis elegans.
Rodríguez-Palero MJ, López-Díaz A, Marsac R, Gomes JE, Olmedo M, Artal-Sanz M.
Sci Rep. 2018 Feb 26;8(1):3633.

Contribution of SPI-1 bistability to Salmonella enterica cooperative virulence: insights from single cell analysis.
Sánchez-Romero MA, Casadesús J.
Sci Rep. 2018 Oct 5;8(1):14875.

Adaptation of Salmonella enterica to bile: essential role of AcrAB-mediated efflux.
Urdaneta V, Casadesús J.
Environ Microbiol. 2018 Apr;20(4):1405-1418.



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2017

DNA-RNA hybrids: the risks of DNA breakage during transcription.
Aguilera A, Gómez-González B.
Nat Struct Mol Biol. 2017 May 4;24(5):439-443.

Dual Expression of the Salmonella Effector SrfJ in Mammalian Cells and Plants.
Aguilera-Herce J, Zarkani AA, Schikora A, Ramos-Morales F.
Front Microbiol. 2017 Dec 6;8:2410.

Carotenoid biosynthesis in Fusarium.
Avalos J, Pardo-Medina J, Parra-Rivero O, Ruger-Herreros M, Rodríguez-Ortiz R, Hornero-Méndez D, Limón MC
J Fungi 2017 3, 39, 1–16.

Molecular Mechanisms Used by Salmonella to Evade the Immune System.
Bernal-Bayard J, Ramos-Morales F.
Curr Issues Mol Biol. 2017 Sep 6;25:133-168.

High-throughput format for the phenotyping of fungi on solid substrates.
Cánovas D, Studt L, Marcos AT, Strauss J.
Sci Rep. 2017 Jun 27;7(1):4289.

Placeholder factors in ribosome biogenesis: please, pave my way.
Espinar-Marchena
FJ, Babiano R, De la Cruz, J.
Microbial Cell 2017, 4, 144-168.

Gene gating at nuclear pores prevents the formation of R loops.
Gaillard H, García-Benítez F, Aguilera A.
Mol Cell Oncol. 2017 Dec 11;5(1):e1405140.

Physical proximity of chromatin to nuclear pores prevents harmful R loop accumulation contributing to maintain genome stability.
García-Benítez F, Gaillard H, Aguilera A.
Proc Natl Acad Sci U S A. 2017 Oct 10;114(41):10942-10947.

Histone Mutants Separate R Loop Formation from Genome Instability Induction.
García-Pichardo D, Cañas JC, García-Rubio ML, Gómez-González B, Rondón AG, Aguilera A.
Mol Cell. 2017 Jun 1;66(5):597-609.e5.

CtIP-Specific Roles during Cell Reprogramming Have Long-Term Consequences in the Survival and Fitness of Induced Pluripotent Stem Cells.
Gómez-Cabello D, Checa-Rodríguez C, Abad M, Serrano M, Huertas P.
Stem Cell Reports. 2017 Feb 14;8(2):432-445.

The ribosome assembly gene network is controlled by the feedback regulation of transcription elongation.
Gómez-Herreros F, Margaritis T, Rodríguez-Galán O, Pelechano V, Begley V, Millán-Zambrano G, Morillo-Huesca M, Muñoz-Centeno MC, Pérez-Ortín JE, de la Cruz J, Holstege FCP, Chávez S.
Nucleic Acids Res. 2017 Sep 19;45(16):9302-9318.

TDP2 suppresses chromosomal translocations induced by DNA topoisomerase II during gene transcription.
Gómez-Herreros F, Zagnoli-Vieira G, Ntai I, Martínez-Macías MI, Anderson RM, Herrero-Ruíz A, Caldecott KW.
Nat Commun. 2017 Aug 10;8(1):233.

Repair of UV-induced DNA lesions in natural Saccharomyces cerevisiae telomeres is moderated by Sir2 and Sir3, and inhibited by yKu-Sir4 interaction.
Guintini L, Tremblay M, Toussaint M, D'Amours A, Wellinger RE, Wellinger RJ, Conconi A.
Nucleic Acids Res. 2017 May 5;45(8):4577-4589.

Identification of Pelomyxa palustris endosymbionts
Gutiérrez G, Chistyakova LV, Villalobo E, Kostygov AY, Frolov AO
Protist. 2017 Aug;168(4):408-424.

Subtracting the sequence bias from partially digested MNase-seq data reveals a general contribution of TFIIS to nucleosome positioning.
Gutiérrez G, Millán-Zambrano G, Medina DA, Jordán-Pla A, Pérez-Ortín JE, Peñate X, Chávez S.
Epigenetics Chromatin. 2017 Dec 7;10(1):58.

Fermentation of glycerol by a newly discovered anaerobic bacterium: adding value to biodiesel production.
Hidalgo M, Puerta-Fernández E.
Microb Biotechnol. 2017 May;10(3):528-530.

Metabolite labelling as a tool to define hierarchies in Clostridium acetobutylicum sugar usage and its relevance for biofuel production.
Hidalgo M, Puerta-Fernández E.
Microb Biotechnol. 2017 May;10(3):525-527.

Differential effect of the overexpression of Rad2/XPG family endonucleases on genome integrity in yeast and human cells.
Jimeno S, Herrera-Moyano E, Ortega P, Aguilera A.
DNA Repair (Amst). 2017 Sep;57:66-75.

The Smc5/6 complex regulates the yeast Mph1 helicase at RNA-DNA hybrid-mediated DNA damage.
Lafuente-Barquero J, Luke-Glaser S, Graf M, Silva S, Gómez-González B, Lockhart A, Lisby M, Aguilera A, Luke B.
PLoS Genet. 2017 Dec 27;13(12):e1007136.

The UbiK protein is an accessory factor necessary for bacterial ubiquinone (UQ) biosynthesis and forms a complex with the UQ biogenesis factor UbiJ.
Loiseau L, Fyfe C, Aussel L, Hajj Chehade M, Hernández SB, Faivre B, Hamdane D, Mellot-Draznieks C, Rascalou B, Pelosi L, Velours C, Cornu D, Lombard M, Casadesús J, Pierrel F, Fontecave M, Barras F.
J Biol Chem. 2017 Jul 14;292(28):11937-11950.

Rpb5 modulates the RNA polymerase II transition from initiation to elongation by influencing Spt5 association and backtracking.
Martínez-Fernández V, Garrido-Godino AI, Mirón-García MC, Begley V, Fernández-Pévida A, de la Cruz J, Chávez S, Navarro F.
Biochim Biophys Acta. 2017 Nov 11;1861(1):1-13.

Asymmetric cell division requires specific mechanisms for adjusting global transcription.
Mena A, Medina DA, García-Martínez J, Begley V, Singh A, Chávez S, Muñoz-Centeno MC, Pérez-Ortín JE.
Nucleic Acids Res. 2017 Dec 1;45(21):12401-12412.

A new role for Rrm3 in repair of replication-born DNA breakage by sister chromatid recombination.
Muñoz-Galván S, García-Rubio M, Ortega P, Ruiz JF, Jimeno S, Pardo B, Gómez-González B, Aguilera A.
PLoS Genet. 2017 May 5;13(5):e1006781.

Sleeping Beauty? Developmental Timing, Sleep, and the Circadian Clock in Caenorhabditis elegans.
Olmedo M, Merrow M, Geibel M.
Adv Genet. 2017;97:43-80.

A Ras GTPase associated protein is involved in the phototropic and circadian photobiology responses in fungi.
Polaino S, Villalobos-Escobedo JM, Shakya VP, Miralles-Durán A, Chaudhary S, SanzC, Shahriari M, Luque EM, Eslava AP, Corrochano LM, Herrera-Estrella A, Idnurm A.
Sci Rep. 2017 Mar 21;7:44790.

Non-Canonical Replication Initiation: You're Fired!
Ravoitytė B, Wellinger RE.
Genes (Basel). 2017 Jan 27;8(2).

Human THO-Sin3A interaction reveals new mechanisms to prevent R-loops that cause genome instability.
Salas-Armenteros I, Pérez-Calero C, Bayona-Feliu A, Tumini E, Luna R, Aguilera A.
EMBO J. 2017 Dec 1;36(23):3532-3547.

Regulation of transcription elongation in response to osmostress.
Silva A, Cavero S, Begley V, Solé C, Böttcher R, Chávez S, Posas F, de Nadal E.
PLoS Genet. 2017 Nov 20;13(11):e1007090.

DNA end resection requires constitutive sumoylation of CtIP by CBX4.
Soria-Bretones I, Cepeda-García C, Checa-Rodriguez C, Heyer V, Reina-San-Martin B, Soutoglou E, Huertas P.
Nat Commun. 2017 Jul 24;8(1):113.

Interactions between Bacteria and Bile Salts in the Gastrointestinal and Hepatobiliary Tracts.
Urdaneta V, Casadesús J.
Front Med (Lausanne). 2017 Oct 3;4:163.


BOOKS AND BOOK CHAPTERS

Carotenoid production by filamentous fungi and yeasts.
Avalos J, Nordzieke S, Parra O, Pardo-Medina J, Limón MC.
In "Biotechnology of Yeasts and Filamentous Fungi", A.A. Sibirny, ed.
Springer, pp. 225–279. 2017

Epigenetics of Infectious Diseases.
W. Doerfler, J. Casadesús (eds.).
2017. ISBN-13: 978-3319550190 (print).  ISBN-10: 3319550195 (e-book).
Springer International Switzerland




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2016

Carotenoid Cleavage Oxygenases from Microbes and Photosynthetic Organisms: Features and Functions.
Ahrazem O, Gómez-Gómez L, Rodrigo MJ, Avalos J, Limón MC.
Int J Mol Sci. 2016 Oct 26;17(11). pii: E1781. Review.


Cyclofarnesoids and methylhexanoids produced from β-carotene in Phycomyces blakesleeanus.
Alcalde E, Medina HR, Herrador MM, Barrero AF, Cerdá-Olmedo E.
Phytochemistry. 2016 Apr;124:38-45.

High-resolution mapping of homologous recombination events in rad3 hyper-recombination mutants in yeast.
Andersen SL, Zhang A, Dominska M, Moriel-Carretero M, Herrera-Moyano E, Aguilera A, Petes TD.
PLoS Genet. 2016 Mar 11;12(3):e1005938.

Nitric oxide in fungi: is there NO light at the end of the tunnel?
Cánovas D, Marcos JF, Marcos AT, Strauss J.
Curr Genet. 2016 Aug;62(3):513-8.

Bacterial DNA Methylation and Methylomes.
Casadesús J.
Adv Exp Med Biol. 2016;945:35-61.

The importance of controlling mRNA turnover during cell proliferation.
Chávez S, García-Martínez J, Delgado-Ramos L, Pérez-Ortín JE.
Curr Genet. 2016 Nov;62(4):701-710. Review.

Proteomic insight into the effects of the Salmonella ubiquitin ligase SlrP on host cells.
Cordero-Alba M, García-Gómez JJ, Aguilera-Herce J, Ramos-Morales F.
Biochem Biophys Res Commun. 2016 Apr 8;472(3):539-44.

Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication.
Corrochano LM, Kuo A, Marcet-Houben M, Polaino S, ..... Grigoriev IV.
Curr Biol. 2016 Jun 20;26(12):1577-84.

OxyR-dependent formation of DNA methylation patterns in OpvABOFF and OpvABON cell lineages of Salmonella enterica.

Cota I, Bunk B, Spröer C, Overmann J, König C, Casadesús J.
Nucleic Acids Res. 2016 May 5;44(8):3595-609.

Role of the yeast ribosomal protein L16 in ribosome biogenesis.
Espinar-Marchena FJ, Fernández-Fernández J, Rodríguez-Galán O, Fernández-Pevida A, Babiano R, de la Cruz J.
FEBS J. 2016 Aug;283(16):2968-85.

The eukaryote-specific N-terminal extension of ribosomal protein S31contributes to the assembly and function of 40S ribosomal subunits.
Fernández-Pevida A, Martín-Villanueva S, Murat G, Lacombe T, Kressler D, de la Cruz J.
Nucleic Acids Res. 2016 Sep 19;44(16):7777-91.

The Complexity of Fungal Vision.
Fischer R, Aguirre J, Herrera-Estrella A, Corrochano LM.
Microbiol Spectr. 2016 Dec;4(6).

Transcription as a Threat to Genome Integrity.
Gaillard H, Aguilera A.
Annu Rev Biochem. 2016 Jun 2;85:291-317.

The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons.
García-Martínez J, Delgado-Ramos L, Ayala G, Pelechano V, Medina DA, Carrasco F, González R, Andrés-León E, Steinmetz L, Warringer J, Chávez S, Pérez-Ortín JE.
Nucleic Acids Res.  2016 May 5;44(8):3643-58.

Excess of Yra1 RNA-Binding Factor Causes Transcription-Dependent Genome Instability, Replication Impairment and Telomere Shortening.
Gavaldá S, Santos-Pereira JM, García-Rubio ML, Luna R, Aguilera A.
PLoS Genet. 2016 Apr 1;12(4):e1005966.


Growth rate controls mRNA turnover in steady and non-steady states.
García-Martínez J, Troulé K, Chávez S, Pérez-Ortín JE.
RNA Biol. 2016 Sep 20:1-7.

Transcription as a Threat to Genome Integrity.
Gaillard H, Aguilera A.
Annu Rev Biochem. 2016 Jun 2;85:291-317.

Transcription-replication conflicts: how they occur and how they are resolved.
García-Muse T, Aguilera A.
Nat Rev Mol Cell Biol. 2016 Sep;17(9):553-63.

Excess of Yra1 RNA-Binding Factor Causes Transcription-Dependent Genome Instability, Replication Impairment and Telomere Shortening.
Gavaldá S, Santos-Pereira JM, García-Rubio ML, Luna R, Aguilera A.
PLoS Genet. 2016 Apr 1;12(4):e1005966.

Specific COPII vesicles transport ER membranes to sites of autophagosome formation.
Goder V.
Mol Cell Oncol. 2016 Apr 15;4(1):e1173768.

Speed matters: How subtle changes in DNA end resection rate affect repair.
Huertas P, Cruz-García A.
Mol Cell Oncol. 2015 May 6;2(3):e982964.

A SNARE and specific COPII requirements define ER-derived vesicles for the biogenesis of autophagosomes.
Lemus L, Goder V.
Autophagy. 2016 Jun 2;12(6):1049-50.

An ER-localized SNARE protein Is exported in specific COPII vesicles for autophagosome biogenesis.
Lemus L, Ribas JL, Sikorska N, Goder V.
Cell Rep. 2016 Feb 23;14(7):1710-22.

A genome-wide screening uncovers the role of CCAR2 as an antagonist of DNA end resection.

López-Saavedra A, Gómez-Cabello D, Domínguez-Sánchez MS, Mejías-Navarro F, Fernández-Ávila MJ, Dinant C, Martínez-Macías MI, Bartek J, Huertas P.

Nat Commun. 2016 Aug 9;7:12364.


FANCD2 Facilitates Replication through Common Fragile Sites.
Madireddy A, Kosiyatrakul ST, Boisvert RA, Herrera-Moyano E, García-Rubio ML, Gerhardt J, Vuono EA, Owen N, Yan Z, Olson S, Aguilera A, Howlett NG, Schildkraut CL.
Mol Cell. 2016 Oct 20;64(2):388-404.

Nitric oxide synthesis by nitrate reductase is regulated during development in Aspergillus.
Marcos AT, Ramos MS, Marcos JF, Carmona L, Strauss J, Cánovas D.
Mol Microbiol. 2016 Jan;99(1):15-33.


Pseudomonas syringae Differentiates into Phenotypically Distinct Subpopulations During Colonization of a Plant Host.

Rufián JS, Sánchez-Romero MA, López-Márquez D, Macho AP, Mansfield JW, Arnold DL, Ruiz-Albert J, Casadesús J, Beuzón CR.

Environ Microbiol. 2016 Oct;18(10):3593-3605.


A Straightforward Access to New Families of Lipophilic Polyphenols by Using Lipolytic Bacteria.
Sánchez-Barrionuevo L, González-Benjumea A, Escobar-Niño A, García MT, López Ó, Maya I, Fernández-Bolaños JG, Cánovas D, Mellado E.
PLoS One. 2016 Nov 17;11(11):e0166561.


Limited ER quality control for GPI-anchored proteins.
Sikorska N, Lemus L, Aguilera-Romero A, Manzano-Lopez J, Riezman H, Muñiz M, Goder V.
J Cell Biol. 2016 Jun 20;213(6):693-704.

Roles of human POLD1 and POLD3 in genome stability.
Tumini E, Barroso S, -Calero CP, Aguilera A.
Sci Rep. 2016 Dec 15;6:38873.



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2015

Biological roles of fungal carotenoids.
Avalos J, Limón M.C
Curr Genet. 2015 Aug;61(3):309-24.

Host cell type-dependent translocation and PhoP-mediated positive regulation of the effector SseK1 of Salmonella enterica.
Baisón-Olmo F, Galindo-Moreno M, Ramos-Morales F.
Front Microbiol. 2015 Apr 29;6:396.

Diversity, ecology, and evolution in Phycomyces.
Camino LP, Idnurm A, Cerdá-Olmedo E.
Fungal Biol. 2015 Nov;119(11):1007-21.

The flavoproteins CryD and VvdA cooperate with the white collar protein WcoA in the control of photocarotenogenesis in Fusarium fujikuroi.
Castrillo M, Avalos J.
PLoS One. 2015 Mar 16;10(3):e0119785.

Biochemical Characterization of the DASH-Type Cryptochrome CryD From Fusarium fujikuroi.
Castrillo M, Bernhardt A, Ávalos J, Batschauer A, Pokorny R.
Photochem Photobiol. 2015 Nov;91(6):1356-1367.

Epigenetic Control of Salmonella enterica O-Antigen Chain Length: A Tradeoff between Virulence and Bacteriophage Resistance.
Cota I, Sánchez-Romero MA, Hernández SB, Pucciarelli MG, García-Del Portillo F, Casadesús J.
PLoS Genet. 2015 Nov 19;11(11):e1005667.

Functions of ribosomal proteins in assembly of eukaryotic ribosomes in vivo.
de la Cruz J, Karbstein K, Woolford JL Jr.
Annu Rev Biochem. 2015;84:93-129.

RNA polymerase II contributes to preventing transcription-mediated replication fork stalls.
Felipe-Abrio I, Lafuente-Barquero J, García-Rubio ML, Aguilera A.
EMBO J. 2015 Jan 13;34(2):236-50.

Processing of preribosomal RNA in Saccharomyces cerevisiae.
Fernández-Pevida A, Kressler D, de la Cruz J.
Wiley Interdiscip Rev RNA. 2015 Mar-Apr;6(2):191-209.

Replication stress and cancer.
Gaillard H, García-Muse T, Aguilera A.
Nat Rev Cancer. 2015 May;15(5):276-89.

Methods to study transcription-coupled repair in chromatin.
Gaillard H, Wellinger RE, Aguilera A.
Methods Mol Biol. 2015;1288:273-88.

Dynamics of the spb4 interactome monitored by affinity purification.
García-Gómez JJ, Lebaron S, Henry Y, de la Cruz J.
Methods Mol Biol. 2015;1259:49-67.

The CarO rhodopsin of the fungus Fusarium fujikuroi is a light-driven proton pump that retards spore germination.

García-Martínez J, Brunk M, Avalos J, Terpitz U.
Sci Rep. 2015 Jan 15;5:7798.

Manganese redistribution by calcium-stimulated vesicle trafficking bypasses the need for P-type ATPase function.
García-Rodríguez N, Manzano-López J, Muñoz-Bravo M, Fernández-García E, Muñiz M, Wellinger RE.
J Biol Chem. 2015 Apr 10;290(15):9335-47.

Cis- and trans-regulatory mechanisms of gene expression in the ASJ sensory neuron of Caenorhabditis elegans.
González-Barrios M, Fierro-González JC, Krpelanova E, Mora-Lorca JA, Pedrajas JR, Peñate X, Chavez S, Swoboda P, Jansen G, Miranda-Vizuete A.
Genetics. 2015 May;200(1):123-34.

Bile-induced peptidoglycan remodelling in Salmonella enterica.
Hernández SB, Cava F, Pucciarelli MG, García-Del Portillo F, de Pedro MA, Casadesús J.
Environ Microbiol. 2015 Apr;17(4):1081-9.

Yeast as a model system to study metabolic impact of selenium compounds.
Herrero E, Wellinger RE
Microbial Cell, 2015. Vol. 2, No. 5, 139-49

Interdependence of the rad50 hook and globular domain functions.
Hohl M, Kochańczyk T, Tous C, Aguilera A, Krężel A, Petrini JH.
Mol Cell. 2015 Feb 5;57(3):479-91.

Speed matters: How subtle changes in DNA end resection rate affect repair.
Huertas P, Cruz-García A
Molecular & Cellular Oncology. 2015, 2:3, e982964

Neddylation inhibits CtIP-mediated resection and regulates DNA double strand break repair pathway choice.
Jimeno S, Fernández-Ávila MJ, Cruz-García A, Cepeda-García C, Gómez-Cabello D, Huertas P.
Nucleic Acids Res. 2015 Jan;43(2):987-99.

Chromatin-dependent regulation of RNA polymerases II and III activity throughout the transcription cycle.
Jordán-Pla A, Gupta I, de Miguel-Jiménez L, Steinmetz LM, Chávez S, Pelechano V, Pérez-Ortín JE.
Nucleic Acids Res. 2015 Jan;43(2):787-802.


Virulence gene regulation by l-arabinose in Salmonella enterica.
López-Garrido J, Puerta-Fernández E, Cota I, Casadesús J.
Genetics. 2015 Jul;200(3):807-19.

COPII coat composition is actively regulated by luminal cargo maturation.
Manzano-López J, Pérez-Linero AM, Aguilera-Romero A, Martin ME, Okano T, Silva DV, Seeberger PH, Riezman H, Funato K, Goder V, Wellinger RE, Muñíz M.
Curr Biol. 2015 Jan 19;25(2):152-62.

The COP9 signalosome is vital for timely repair of DNA double-strand breaks.
Meir M, Galanty Y, Kashani L, Blank M, Khosravi R, Fernández-Ávila MJ, Cruz-García A, Star A, Shochot L, Thomas Y, Garrett LJ, Chamovitz DA, Bodine DM, Kurz T, Huertas P, Ziv Y, Shiloh Y.
Nucleic Acids Res. 2015 May 19;43(9):4517-30.

A unified model for the molecular basis of Xeroderma pigmentosum-Cockayne Syndrome.
Moriel-Carretero M, Herrera-Moyano E, Aguilera A.
Rare Dis. 2015 Aug 7;3(1):e1079362.

Dispensability of the SAC Depends on the Time Window Required by Aurora B to Ensure Chromosome Biorientation.
Muñoz-Barrera M, Aguilar I, Monje-Casas F.
PLoS One. 2015 Dec 14;10(12):e0144972.

H3K4 monomethylation dictates nucleosome dynamics and chromatin remodeling at stress-responsive genes.
Nadal-Ribelles M, Mas G, Millán-Zambrano G, Solé C, Ammerer G, Chávez S, Posas F, de Nadal E.
Nucleic Acids Res. 2015 May 26;43(10):4937-49.

Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer in Salmonella.
Papenfort K, Espinosa E, Casadesús J, Vogel J.
Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):E4772-81.

The dedicated chaperone Acl4 escorts ribosomal protein Rpl4 to Its nuclear pre-60S assembly site.
Pillet B, García-Gómez JJ, Pausch P, Falquet L, Bange G, de la Cruz J, Kressler D.
PLoS Genet. 2015 Oct 8;11(10):e1005565.

Generation and use of site-directed chromosomal cyaA' translational fusions in Salmonella enterica.
Ramos-Morales F, Cardenal-Muñoz E, Cordero-Alba M, Baisón-Olmo F.
Methods Mol Biol. 2015;1225:93-104.

Immature large ribosomal subunits containing the 7S pre-rRNA can engage in translation in Saccharomyces cerevisiae
.
Rodríguez-Galán O, García-Gómez JJ, Kressler D, de la Cruz J.
RNA Biol. 2015 Aug 3;12(8):838-46.

DNA methylation in bacteria: from the methyl group to the methylome.
Sánchez-Romero MA, Cota I, Casadesús J.
Curr Opin Microbiol. 2015 Jun;25:9-16.

Role for RNA:DNA hybrids in origin-independent replication priming in a eukaryotic system.
Stuckey R, García-Rodríguez N, Aguilera A, Wellinger RE.
Proc Natl Acad Sci U S A. 2015 May 5;112(18):5779-84.

Fungal cryptochrome with DNA repair activity reveals an early stage in cryptochrome evolution.
Tagua VG, Pausch M, Eckel M, Gutiérrez G, Miralles-Durán A, Sanz C, Eslava AP, Pokorny R, Corrochano LM, Batschauer A.
Proc Natl Acad Sci U S A. 2015 Dec 8;112(49):15130-5.



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2014

Transcription and recombination: when RNA meets DNA.
Aguilera A, Gaillard H.
Cold Spring Harb Perspect Biol. 2014 Aug 1;6(8).

ATM specifically mediates repair of double-strand breaks with blocked DNA ends.
Álvarez-Quilón A, Serrano-Benítez A, Lieberman JA, Quintero C, Sánchez-Gutiérrez D, Escudero LM, Cortés-Ledesma F.
Nat Commun. 2014 Feb 27;5:3347.

BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2.
Bhatia V, Barroso SI, García-Rubio ML, Tumini E, Herrera-Moyano E, Aguilera A.
Nature. 2014 Jul 17;511(7509):362-5.

The histone acetyltransferase GcnE (GCN5) plays a central role in the regulation of Aspergillus asexual development.
Cánovas D, Marcos AT, Gacek A, Ramos MS, Gutiérrez G, Reyes-Domínguez Y, Strauss J.
Genetics. 2014 Jun 6;197(4):1175-1189.

Global impact of Salmonella type III secretion effector SteA on host cells.
Cardenal-Muñoz E, Gutiérrez G, Ramos-Morales F.
Biochem Biophys Res Commun. 2014 Jul 11;449(4):419-24.

Light-mediated participation of the VIVID-like protein of Fusarium fujikuroi VvdA in pigmentation and development.
Castrillo M, Avalos J.
Fungal Genet Biol. 2014 Aug 19;71C:9-20.

A global multilocus analysis of the model fungus Neurospora reveals a single recent origin of a novel genetic system.
Corcoran P, Dettman JR, Sun Y, Luque EM, Corrochano LM, Taylor JW, Lascoux M, Johannesson H.
Mol Phylogenet Evol. 2014 Sep;78:136-47.

Patterns of expression and translocation of the ubiquitin ligase SlrP in Salmonella enterica serovar Typhimurium.
Cordero-Alba M, Ramos-Morales F.
J Bacteriol. 2014 Nov;196(22):3912-22.

BRCA1 accelerates CtIP-mediated DNA-end resection.
Cruz-García A, López-Saavedra A, Huertas P.
Cell Rep. 2014 Oct 23;9(2):451-9.

Flow cytometry of microencapsulated colonies for genetics analysis of filamentous fungi.
Delgado-Ramos L, Marcos AT, Ramos-Guelfo MS, Sánchez-Barrionuevo L, Smet F, Chávez S, Cánovas D.
G3 (Bethesda). 2014 Sep 19;4(11):2271-8.

Overproduction of 2-phenylethanol by industrial yeasts to improve organoleptic properties of bakers' products.
Dueñas-Sánchez R, Pérez AG, Codón AC, Benítez T, Rincón AM.
Int J Food Microbiol. 2014 Jun 16;180:7-12.

Selection and characterization of biofuel-producing environmental bacteria isolated from vegetable oil-rich wastes.
Escobar-Niño A, Luna C, Luna D, Marcos AT, Cánovas D,
Mellado E.
PLoS One. 2014 Aug 6;9(8):e104063.

Regulation of Salmonella enterica pathogenicity island 1 (SPI-1) by the LysR-type regulator LeuO.
Espinosa E, Casadesús J.
Mol Microbiol. 2014 Mar;91(6):1057-69.

Cleavage factor I links transcription termination to DNA damage response and genome integrity maintenance in Saccharomyces cerevisiae.
Gaillard H, Aguilera A.
PLoS Genet. 2014 Mar 6;10(3):e1004203.

Final pre-40S maturation depends on the functional integrity of the 60S subunit ribosomal protein L3.
García-Gómez JJ, Fernández-Pevida A, Lebaron S, Rosado IV, Tollervey D, Kressler D, de la Cruz J.
PLoS Genet. 2014 Mar 6;10(3):e1004205.

The gene cutA of Fusarium fujikuroi, encoding a protein of the haloacid dehalogenase family, is involved in osmotic stress and glycerol metabolism.
García-Martínez J, Castrillo M, Avalos J.
Microbiology. 2014 Jan;160(Pt 1):26-36.

The yeast and human FACT chromatin-reorganizing complexes solve R-loop-mediated transcription-replication conflicts.
Herrera-Moyano E, Mergui X, García-Rubio ML, Barroso S, Aguilera A.
Genes Dev. 2014 Apr 1;28(7):735-48.

Regulation of endoplasmic reticulum-associated protein degradation (ERAD) by ubiquitin.
Lemus L, Goder V.
Cells. 2014 Aug 5;3(3):824-47.

A eukaryotic-like 3' untranslated region in Salmonella enterica hilD mRNA.
López-Garrido J, Puerta-Fernández E, Casadesús J.
Nucleic Acids Res. 2014;42(9):5894-906.

Cytoplasmic 5'-3' exonuclease Xrn1p is also a genome-wide transcription factor in yeast.
Medina DA, Jordán-Pla A, Millán-Zambrano G, Chávez S, Choder M, Pérez-Ortín JE.
Front Genet. 2014 Feb 6;5:1.

Nuclear functions of prefoldin.
Millán-Zambrano G, Chávez S.
Open Biol. 2014 Jul;4(7). pii: 140085.

The yeast prefoldin-like URI-orthologue Bud27 associates with the RSC nucleosome remodeler and modulates transcription.
Mirón-García MC, Garrido-Godino AI, Martínez-Fernández V, Fernández-Pevida A, Cuevas-Bermúdez A, Martín-Expósito M, Chávez S, de la Cruz J, Navarro F.
Nucleic Acids Res. 2014 Sep;42(15):9666-76.

Increased Aurora B activity causes continuous disruption of kinetochore-microtubule attachments and spindle instability.
Muñoz-Barrera M, Monje-Casas F.
Proc Natl Acad Sci U S A. 2014 Sep 23;111(38):E3996-4005.

Dormant intracellular Salmonella enterica serovar Typhimurium discriminates among Salmonella pathogenicity island 2 effectors to persist inside fibroblasts.

Núñez-Hernández C, Alonso A, Pucciarelli MG, Casadesús J, García-del Portillo F.
Infect Immun. 2014 Jan;82(1):221-32.

Alteration of light-dependent gene regulation by the absence of the RCO-1/RCM-1 repressor complex in the fungus Neurospora crassa.
Ruger-Herreros C, Gil-Sánchez Mdel M, Sancar G, Brunner M, Corrochano LM.
PLoS One. 2014 Apr 18;9(4):e95069.

Contribution of phenotypic heterogeneity to adaptive antibiotic resistance.
Sánchez-Romero MA, Casadesús J.
Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):355-60.

A genome-wide function of THSC/TREX-2 at active genes prevents transcription-replication collisions.
Santos-Pereira JM, García-Rubio ML, González-Aguilera C, Luna R, Aguilera A.
Nucleic Acids Res. 2014 Oct 29;42(19):12000-14.

Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability.
Sollier J, Stork CT, García-Rubio ML, Paulsen RD, Aguilera A, Cimprich KA.
Mol Cell. 2014 Dec 18;56(6):777-85.


Using yeast to model calcium-related diseases: example of the Hailey-Hailey disease.
Voisset C, García-Rodríguez N, Birkmire A, Blondel M, Wellinger RE.
Biochim Biophys Acta. 2014 Oct;1843(10):2315-21.

The structure of the Slrp-Trx1 complex sheds light on the autoinhibition mechanism of the type III secretion system effectors of the NEL family.
Zouhir S, Bernal-Bayard J, Cordero-Alba M, Cardenal-Muñoz E, Guimaraes B, Lazar N, Ramos-Morales F, Nessler S.
Biochem J. 2014 Nov 15;464(1):135-44.


BOOKS AND BOOK CHAPTERS

Carotenoids.
Avalos J, Díaz-Sánchez V, García-Martínez J, Castrillo M, Ruger-Herreros M, Limón MC
In "Biosynthesis and Molecular Genetics of Fungal Secondary Metabolites" (Martín JF, García-Estrada C, Zeilinger S, eds). Springer, pp 149-185. (2014)



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2013

Causes of Genome Instability.
Aguilera A, García-Muse T.
Annu Rev Genet. 2013;47:1-32.

Yeast ribosomal protein L7 and its homologue Rlp7 are simultaneously present at distinct sites on pre-60S ribosomal particles.

Babiano R, Badis G, Saveanu C, Namane A, Doyen A, Díaz-Quintana A, Jacquier A, Fromont-Racine M, de la Cruz J.
Nucleic Acids Res. 2013 Nov 1;41(20):9461-70.

DsbA and MgrB regulate steA expression through the two-component system PhoQ/PhoP in Salmonella enterica.
Cardenal-Muñoz E, Ramos-Morales F.
J Bacteriol. 2013 May;195(10):2368-78.

Programmed heterogeneity: epigenetic mechanisms in bacteria.
Casadesús J, Low DA.
J Biol Chem. 2013 May 17;288(20):13929-35.

R loops are linked to histone H3 S10 phosphorylation and chromatin condensation.
Castellano-Pozo M, Santos-Pereira JM, Rondón AG, Barroso S, Andújar E, Pérez-Alegre M, García-Muse T, Aguilera A.
Mol Cell. 2013 Nov 21;52(4):583-90.

Light-dependent functions of the Fusarium fujikuroi CryD DASH cryptochrome in development and secondary metabolism.
Castrillo M, García-Martínez J, Avalos J.
Appl Environ Microbiol. 2013 Apr;79(8):2777-88.

The Oxygenase CAO-1 of Neurospora crassa Is a Resveratrol Cleavage Enzyme.
Díaz-Sánchez V, F Estrada A, Limón MC, Al-Babili S, Avalos J.
Eukaryot Cell. 2013 Sep;12(9):1305-14.

Overexpression of stress-related genes enhances cell viability and velum formation in Sherry wine yeasts.
Fierro-Risco J, Rincón AM, Benítez T, Codón AC.
Appl Microbiol Biotechnol. 2013 Aug;97(15):6867-81.

Transcription coupled repair at the interface between transcription elongation and mRNP biogenesis.
Gaillard H, Aguilera A.
Biochim Biophys Acta. 2013 Jan;1829(1):141-50.

Transcription-associated genome instability.
Gaillard H, Herrera-Moyano E, Aguilera A.
Chem Rev. 2013 Nov 13;113(11):8638-61.

Yeast polypeptide exit tunnel ribosomal proteins L17, L35 and L37 are necessary to recruit late-assembling factors required for 27SB pre-rRNA processing.
Gamalinda M, Jakovljevic J, Babiano R, Talkish J, de la Cruz J, Woolford JL Jr.
Nucleic Acids Res. 2013 Feb 1;41(3):1965-83.

R-loop mediated transcription-associated recombination in trf4Δ mutants reveals new links between RNA surveillance and genome integrity.
Gavaldá S, Gallardo M, Luna R, Aguilera A.
PLoS One. 2013 Jun 7;8(6):e65541.

A genome-wide screen identifies yeast genes required for tolerance to technical toxaphene, an organochlorinated pesticide mixture.
Gaytán BD, Loguinov AV, Peñate X, Lerot JM, Chávez S, Denslow ND, Vulpe CD.
PLoS One. 2013 Nov 18;8(11):e81253.

Balanced production of ribosome components is required for proper G1/S transition in Saccharomyces cerevisiae.
Gómez-Herreros F, Rodríguez-Galán O, Morillo-Huesca M, Maya D, Arista-Romero M, de la Cruz J, Chávez S, Muñoz-Centeno MC.
J Biol Chem. 2013 Nov 1;288(44):31689-700.

Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis.
Haimovich G, Medina DA, Causse SZ, Garber M, Millán-Zambrano G, Barkai O, Chávez S, Pérez-Ortín JE, Darzacq X, Choder M.
Cell. 2013 May 23;153(5):1000-11.

Increased bile resistance in Salmonella enterica mutants lacking Prc periplasmic protease.
Hernández SB, Ayala JA, Rico-Pérez G, García-del Portillo F, Casadesús J.
Int Microbiol. 2013 Jun;16(2):87-92.

External conditions inversely change the RNA polymerase II elongation rate and density in yeast.
Miguel A, Montón F, Li T, Gómez-Herreros F, Chávez S, Alepuz P, Pérez-Ortín JE.
Biochim Biophys Acta. 2013 Nov;1829(11):1248-55.

The Prefoldin Complex Regulates Chromatin Dynamics during Transcription Elongation.
Millán-Zambrano G, Rodríguez-Gil A, Peñate X, de Miguel-Jiménez L, Morillo-Huesca M, Krogan N, Chávez S.
PLoS Genet. 2013 Sep;9(9):e1003776.

Histone H3K56 acetylation, Rad52, and non-DNA repair factors control double-strand break repair choice with the sister chromatid.
Muñoz-Galván S, Jimeno S, Rothstein R, Aguilera A.
PLoS Genet. 2013;9(1):e1003237.

Competing roles of DNA end resection and non-homologous end joining functions in the repair of replication-born double-strand breaks by sister-chromatid recombination.
Muñoz-Galván S, López-Saavedra A, Jackson SP, Huertas P, Cortés-Ledesma F, Aguilera A.
Nucleic Acids Res. 2013 Feb 1;41(3):1669-83.

Genome expression analysis of nonproliferating intracellular Salmonella enterica serovar Typhimurium unravels an acid pH-dependent PhoP-PhoQ response essential for dormancy.
Núñez-Hernández C, Tierrez A, Ortega AD, Pucciarelli MG, Godoy M, Eisman B, Casadesús J, García-del Portillo F.
Infect Immun. 2013 Jan;81(1):154-65.

The role of flagella and chemotaxis genes in host pathogen interaction of the host adapted Salmonella enterica serovar Dublin compared to the broad host range serovar S. Typhimurium.
Olsen JE, Hoegh-Andersen KH, Casadesús J, Rosenkranzt J, Chadfield MS, Thomsen LE.
BMC Microbiol. 2013 Mar 25;13:67.

Intestinal invasion of Salmonella enterica serovar Typhimurium in the avian host is dose dependent and does not depend on motility and chemotaxis.
Olsen JE, Hoegh-Andersen KH, Rosenkrantz JT, Schroll C, Casadesús J, Aabo S, Christensen JP.
Vet Microbiol. 2013 Aug 30;165(3-4):373-7.

Eukaryotic mRNA decay: methodologies, pathways, and links to other stages of gene expression.
Pérez-Ortín JE, Alepuz P, Chávez S, Choder M.
J Mol Biol. 2013 Oct 23;425(20):3750-75.

What do you mean by transcription rate?: the conceptual difference between nascent transcription rate and mRNA synthesis rate is essential for the proper understanding of transcriptomic analyses.
Pérez-Ortín JE, Medina DA, Chávez S, Moreno J.
Bioessays. 2013 Dec;35(12):1056-62.

Yeast and human RNA helicases involved in ribosome biogenesis: current status and perspectives.
Rodríguez-Galán O, García-Gómez JJ, de la Cruz J.
Biochim Biophys Acta. 2013 Aug;1829(8):775-90.

Functional analysis of the carS gene of Fusarium fujikuroi.
Rodríguez-Ortiz R, Limón MC, Avalos J.
Mol Genet Genomics. 2013 Apr;288(3-4):157-73.

Selection of an autochthonous Saccharomyces strain starter for alcoholic fermentation of Sherry base wines.
Rodríguez-Palero MJ, Fierro-Risco J, Codón AC, Benítez T, Valcárcel MJ.
J Ind Microbiol Biotechnol. 2013 Jun;40(6):613-23.

The Npl3 hnRNP prevents R-loop-mediated transcription-replication conflicts and genome instability.
Santos-Pereira JM, Herrero AB, García-Rubio ML, Marín A, Moreno S, Aguilera A.
Genes Dev. 2013 Nov 15;27(22):2445-58.

Inhibition of the mitotic exit network in response to damaged telomeres.
Valerio-Santiago M, de Los Santos-Velázquez AI, Monje-Casas F.
PLoS Genet. 2013;9(10):e1003859.


BOOKS AND BOOK CHAPTERS

Carotenoid biosynthesis on Neurospora.
Avalos J, Corrochano LM
In "Neurospora. Genomics and Molecular Biology" (Kasbekar D, Ebbole D, McCluskey K, eds.)
Caister Academic Press, Norfolk, UK, pp 227-241 (2013)

Epigenetics.
Casadesús J, Noyer-Weidner M.
In "Brenner’s Encyclopedia of Genetics", 2nd. ed. (Maloy S, Hughes K, eds.)
Academic Press, San Diego. Pp. 500-503 (2013)

A histone cycle
Maya D, Morillo-Huesca M, Delgado-Ramos L, Chávez S, Muñoz-Centeno MC
In "The Mechanisms of DNA Replication" (Stuart D, ed.)
INTECH Open Science, pp 377-402 (2013)



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2012

Neurosporaxanthin production by Neurospora and Fusarium.
Avalos J, Prado-Cabrero A, Estrada AF.
Methods Mol Biol. 2012;898:263-74.

Saccharomyces cerevisiae ribosomal protein L26 is not essential for ribosome assembly and function.
Babiano R, Gamalinda M, Woolford JL Jr, de la Cruz J.
Mol Cell Biol. 2012 Aug;32(16):3228-41.

PipB2 is a substrate of the Salmonella pathogenicity island 1-encoded type III secretion system.
Baisón-Olmo F, Cardenal-Muñoz E, Ramos-Morales F.
Biochem Biophys Res Commun. 2012 Jun 29;423(2):240-6.

R-loops cause replication impairment and genome instability during meiosis.
Castellano-Pozo M, García-Muse T, Aguilera A.
EMBO Rep. 2012 Oct;13(10):923-9.

The Caenorhabditis elegans THO complex is required for the mitotic cell cycle and development.

Castellano-Pozo M, García-Muse T, Aguilera A.
PLoS One. 2012;7(12):e52447.

Isolation of Mutants and Construction of Intersexual Heterokaryons of Blakeslea trispora.
Cerdá-Olmedo E, Mehta BJ.
Methods Mol Biol. 2012;898:75-84.

Gene Control during Transcription Elongation.
Chávez S, Gross DS, Hermand D, Suñé C.
Genet Res Int. 2012;2012:758384.

SrfJ, a Salmonella type III secretion system effector regulated by PhoP, RcsB, and IolR.
Cordero-Alba M, Bernal-Bayard J, Ramos-Morales F.
J Bacteriol. 2012 Aug;194(16):4226-36.

STM2209-STM2208 (opvAB): a phase variation locus of Salmonella enterica
involved in control of O-antigen chain length.
Cota I, Blanc-Potard AB, Casadesús J.
PLoS One. 2012;7(5):e36863.

Identification and regulation of fusA, the polyketide synthase gene responsible for fusarin production in Fusarium fujikuroi.
Díaz-Sánchez V, Avalos J, Limón MC.
Appl Environ Microbiol. 2012 Oct;78(20):7258-66.

LeuO is a global regulator of gene expression in Salmonella enterica serovar Typhimurium.
Dillon SC, Espinosa E, Hokamp K, Ussery DW, Casadesús J, Dorman CJ.
Mol Microbiol. 2012 Sep;85(6):1072-89.

Transcriptional regulation of fermentative and respiratory metabolism in Saccharomyces cerevisiae industrial bakers' strains.
Dueñas-Sánchez R, Gutiérrez G, Rincón AM, Codón AC, Benítez T.
FEMS Yeast Res. 2012 Sep;12(6):625-36.

Yeast ribosomal protein l40 assembles late into precursor 60 s ribosomes and is required for their cytoplasmic maturation.
Fernández-Pevida A, Rodríguez-Galán O, Díaz-Quintana A, Kressler D, de la Cruz J.
J Biol Chem. 2012 Nov 2;287(45):38390-407.

Adenylyl Cyclase Plays a Regulatory Role in Development, Stress Resistance and Secondary Metabolism in Fusarium fujikuroi.
García-Martínez J, Adám AL, Avalos J.
PLoS One. 2012;7(1):e28849.

The relative importance of transcription rate, cryptic transcription and mRNA stability on shaping stress responses in yeast.
García-Martínez J, Ayala G, Pelechano V, Chávez S, Herrero E, Pérez-Ortín JE.
Transcription. 2012 Jan-Feb;3(1):39-44.

Topological constraints impair RNA polymerase II transcription and causes instability of plasmid-borne convergent genes.
García-Rubio ML, Aguilera A.
Nucleic Acids Res. 2012 Feb;40(3):1050-64.

Impaired manganese metabolism causes mitotic misregulation.
García-Rodríguez N, Díaz de la Loza M del C, Andreson B, Monje-Casas F, Rothstein R, Wellinger RE.
J Biol Chem. 2012 May 25;287(22):18717-29.

Roles of Ubiquitin in Endoplasmic Reticulum-Associated Protein Degradation (ERAD).
Goder V.
Curr Protein Pept Sci. 2012 Aug 1;13(5):425-35.

One step back before moving forward: regulation of transcription elongation by arrest and backtracking.
Gómez-Herreros F, de Miguel-Jiménez L, Millán-Zambrano G, Peñate X, Delgado-Ramos L, Muñoz-Centeno MC, Chávez S.
FEBS Lett. 2012 Aug 31;586(18):2820-5.

TFIIS is required for the balanced expression of the genes encoding ribosomal components under transcriptional stress.
Gómez-Herreros F, de Miguel-Jiménez L, Morillo-Huesca M, Delgado-Ramos L, Muñoz-Centeno MC, Chávez S.
Nucleic Acids Res. 2012 Aug;40(14):6508-19.

Draft Genome Sequence of Methanobacterium formicicum DSM 3637, an Archaebacterium Isolated from the Methane Producer Amoeba Pelomyxa palustris.
Gutiérrez G.
J Bacteriol. 2012 Dec;194(24):6967-8.

Adaptation and Preadaptation of Salmonella enterica to Bile.
Hernández SB, Cota I, Ducret A, Aussel L, Casadesús J.
PLoS Genet. 2012 Jan;8(1):e1002459.

Crosstalk between virulence loci: regulation of Salmonella enterica pathogenicity island 1 (SPI-1) by products of the std fimbrial operon.

López-Garrido J, Casadesús J.
PLoS One. 2012;7(1):e30499.


New clues to understand the role of THO and other functionally related factors in mRNP biogenesis.

Luna R, Rondón AG, Aguilera A.
Biochim Biophys Acta. 2012 Jun;1819(6):514-20.

A Relationship between Carotenoid Accumulation and the Distribution of Species of the Fungus Neurospora in Spain.
Luque EM, Gutiérrez G, Navarro-Sampedro L, Olmedo M, Rodríguez-Romero J, Ruger-Herreros C, Tagua VG, Corrochano LM.
PLoS One. 2012;7(3):e33658.

Mpg2 interacts and cooperates with Mpg1 to maintain yeast glycosylation.
Muñoz-Centeno MC, Martín-Guevara C, Flores A, Pérez-Pulido AJ, Antúnez-Rodríguez C, Castillo AG, Sanchez-Durán M, Mier P, Bejarano ER.
FEMS Yeast Res. 2012 Aug;12(5):511-20.

A matter of packaging: influence of nucleosome positioning on heterologous gene expression.
Muñoz-Centeno MC, Millán-Zambrano G, Chávez S.
Methods Mol Biol. 2012;824:51-64.

Complex chromosomal rearrangements mediated by break-induced replication involve structure-selective endonucleases.

Pardo B, Aguilera A.
PLoS Genet. 2012 Sep;8(9):e1002979.

Genome-wide studies of mRNA synthesis and degradation in eukaryotes.
Pérez-Ortín JE, de Miguel-Jiménez L, Chávez S.
Biochim Biophys Acta. 2012 Jun;1819(6):604-15.

Acidic pH: Enemy or ally for enteric bacteria?
Ramos-Morales F.
Virulence. 2012 Mar 1;3(2).

Impact of Salmonella enterica Type III Secretion System Effectors on the Eukaryotic Host Cell.
Ramos-Morales F
ISRN Cell Biology 2012 Volume 2012. Article ID 787934

Genetic basis of carotenoid overproduction in Fusarium oxysporum.
Rodríguez-Ortiz R, Michielse C, Rep M, Limón MC, Avalos J.
Fungal Genet Biol. 2012 Sep;49(9):684-96.

A gene for carotene cleavage required for pheromone biosynthesis and carotene regulation in the fungus Phycomyces blakesleeanus.
Tagua VG, Medina HR, Martín-Domínguez R, Eslava AP, Corrochano LM, Cerdá-Olmedo E, Idnurm A.
Fungal Genet Biol. 2012 May;49(5):398-404.


BOOKS AND BOOK CHAPTERS

Bacterial adaptation: built-in responses and random variations.
Casadesús J
In Microbes and the Origin of Species (Maloy SR, Kolter R, eds.)
ASM Press, pp 1-9 (2012)

A matter of packaging: Influence of nucleosome positioning on heterologous gene expresión
Muñoz-Centeno MC, Millán-Zambrano G, Chávez S
In Recombinant Gene Expression, Reviews and protocols (Balbas P, Lorence A, eds.)
Methods in Molecular Biology vol.824, Human Press, Springer (2012)



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2011

The MAT1-2-1 mating-type gene upregulates photo-inducible carotenoid biosynthesis in Fusarium verticillioides.
Adám AL, García-Martínez J, Szucs EP, Avalos J, Hornok L.
FEMS Microbiol Lett. 2011 May;318(1):76-83.

Cleavage of resveratrol in fungi: characterization of the enzyme Rco1 from Ustilago maydis.
Brefort T, Scherzinger D, Limón MC, Estrada AF, Trautmann D, Mengel C, Avalos J, Al-Babili S.
Fungal Genet Biol. 2011 Feb;48(2):132-43.

Analysis of the Expression, Secretion and Translocation of the Salmonella enterica
Type III Secretion System Effector SteA.
Cardenal-Muñoz E, Ramos-Morales F.
PLoS One. 2011;6(10):e26930.

Salmonella: from basic science to clinical issues.
Casadesús J.
Future Microbiol. 2011 Feb;6(2):133-5.

Fungal photobiology: a synopsis.
Corrochano LM.
IMA Fungus. 2011 Jun;2(1):25-8.

Zim17/Tim15 links mitochondrial iron-sulfur cluster biosynthesis to nuclear genome stability.
Díaz de la Loza M del C, Gallardo M, García-Rubio ML, Izquierdo A, Herrero E, Aguilera A, Wellinger RE.
Nucleic Acids Res. 2011 Aug;39(14):6002-15.

The gene carD encodes the aldehyde dehydrogenase responsible for neurosporaxanthin biosynthesis in Fusarium fujikuroi.
Díaz-Sánchez V, Estrada AF, Trautmann D, Al-Babili S, Avalos J.
FEBS J. 2011 Sep;278(17):3164-76.

Analysis of al-2 mutations in Neurospora.
Díaz-Sánchez V, Estrada AF, Trautmann D, Limón MC, Al-Babili S, Avalos J.
PLoS One. 2011 Jul;6(7):e21948.

Genome instability and transcription elongation impairment in human cells depleted of THO/TREX.
Domínguez-Sánchez MS, Barroso S, Gómez-González B, Luna R, Aguilera A.
PLoS Genet. 2011 Dec;7(12):e1002386.

Differential expression of THOC1 and ALY mRNP biogenesis/export factors in human cancers.
Domínguez-Sánchez MS, Sáez C, Japón MA, Aguilera A, Luna R.
BMC Cancer. 2011 Feb 17;11:77.

Chromatin reassembly factors are involved in transcriptional interference promoting HIV latency.
Gallastegui E, Millán-Zambrano G, Terme JM, Chávez S, Jordan A.
J Virol. 2011 Apr;85(7):3187-202.

Nop6, a component of 90S pre-ribosomal particles, is required for 40S ribosomal subunit biogenesis in Saccharomyces cerevisiae.
García-Gómez JJ, Babiano R, Lebaron S, Froment C, Monsarrat B, Henry Y, de la Cruz J.
RNA Biol. 2011 Jan-Feb;8(1):112-24.

Dynamics of the Putative RNA Helicase Spb4 during Ribosome Assembly in Saccharomyces cerevisiae.
García-Gómez JJ, Lebaron S, Froment C, Monsarrat B, Henry Y, de la Cruz J.
Mol Cell Biol. 2011 Oct;31(20):4156-64.

Virulence plasmid interchange between strains ATCC 14028, LT2, and SL1344 of Salmonella enterica serovar Typhimurium.
García-Quintanilla M, Casadesús J.
Plasmid. 2011 Mar;65(2):169-75.

Protein O-mannosyltransferases participate in ER protein quality control.
Goder V, Melero A.
J Cell Sci. 2011 Jan 1;124(Pt 1):144-53.

Genome-wide function of THO/TREX in active genes prevents R-loop-dependent replication obstacles.
Gómez-González B, García-Rubio M, Bermejo R, Gaillard H, Shirahige K, Marín A, Foiani M, Aguilera A.
EMBO J. 2011 Jun 24;30(15):3106-19.


Genetic and molecular analysis of mitotic recombination in Saccharomyces cerevisiae.
Gómez-González B, Ruiz JF, Aguilera A.
Methods Mol Biol. 2011;745:151-72.

Nab2 functions in the metabolism of RNA driven by polymerases II and III.
González-Aguilera C, Tous C, Babiano R, de la Cruz J, Luna R, Aguilera A.
Mol Biol Cell. 2011 Aug 1;22(15):2729-40.

Regulation at multiple levels: themes and variations.
Henkin TM, Casadesús J.
Curr Opin Microbiol. 2011 Apr;14(2):115-7.

The effects of disruption of phosphoglucose isomerase gene on carbon utilisation and cellulase production in Trichoderma reesei Rut-C30.
Limón MC, Pakula T, Saloheimo M, Penttilä M.
Microb Cell Fact. 2011 May 24;10:40.


Cleavage oxygenases for the biosynthesis of trisporoids and other apocarotenoids in Phycomyces.
Medina HR, Cerdá-Olmedo E, Al-Babili S.
Mol Microbiol. 2011 Oct;82(1):199-208.

CtIP Mutations Cause Seckel and Jawad Syndromes.
Qvist P, Huertas P, Jimeno S, Nyegaard M, Hassan MJ, Jackson SP, Børglum AD.
PLoS Genet. 2011 Oct;7(10):e1002310.

Regulation of conidiation by light in Aspergillus nidulans.
Ruger-Herreros C, Rodríguez-Romero J, Fernández-Barranco R, Olmedo M, Fischer R, Corrochano LM, Canovas D.
Genetics. 2011 Aug;188(4):809-22.

AID induces double-strand breaks at immunoglobulin switch regions and c-MYC causing chromosomal translocations in yeast THO mutants.
Ruiz JF, Gómez-González B, Aguilera A.
PLoS Genet. 2011 Feb;7(2):e1002009.

A novel assay identifies transcript elongation roles for the Nup84 complex and RNA processing factors.
Tous C, Rondón AG, García-Rubio M, González-Aguilera C, Luna R, Aguilera A.
EMBO J. 2011 May 18;30(10):1953-64.

Tem1 localization to the spindle pole bodies is essential for mitotic exit and impairs spindle checkpoint function.
Valerio-Santiago M, Monje-Casas F.
J Cell Biol. 2011 Feb 21;192(4):599-614.


BOOKS AND BOOK CHAPTERS

Free Histones and the Cell Cycle.
Maya D, Morillo-Huesca M, Chávez S, Muñoz-Centeno MC
In "DNA Replication - Current Advances" (Seligmann H, ed.)
INTECH Open Science, pp 409-426 (2011)



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2010

Regulation by light in Fusarium.
Avalos J, Estrada AF.
Fungal Genet Biol. 2010 Nov;47(11):930-8.

Ribosomal protein L35 is required for 27SB pre-rRNA processing in Saccharomyces cerevisiae.
Babiano R, de la Cruz J.
Nucleic Acids Res. 2010 Aug;38(15):5177-92.

Recognition of heptameric seed sequence underlies multi-target regulation by RybB small RNA in Salmonella enterica.
Balbontín R, Fiorini F, Figueroa-Bossi N, Casadesús J, Bossi L.
Mol Microbiol. 2010 Oct;78(2):380-94.

The Salmonella type III secretion effector, salmonella leucine-rich repeat protein (SlrP), targets the human chaperone ERdj3.
Bernal-Bayard J, Cardenal-Muñoz E, Ramos-Morales F.
J Biol Chem. 2010 May 21;285(21):16360-8.

Photobiology in the Zygomycota: multiple photoreceptor genes for complex responses to light.
Corrochano LM, Garre V.
Fungal Genet Biol. 2010 Nov;47(11):893-9.

Increased biomass production of industrial bakers' yeasts by overexpression of Hap4 gene.
Dueñas-Sánchez R, Codón AC, Rincón AM, Benítez T.
Int J Food Microbiol. 2010 Oct 15;143(3):150-60.

Bikaverin production and applications.
Limón MC, Rodríguez-Ortiz R, Avalos J.
Appl Microbiol Biotechnol. 2010 Jun;87(1):21-9.

The DamX protein of Escherichia coli and Salmonella enterica.
López-Garrido J, Casadesús J.
Gut Microbes. 2010 Jul;1(4):285-288.

A postincision-deficient TFIIH causes replication fork breakage and uncovers alternative Rad51- or Pol32-mediated restart mechanisms.
Moriel-Carretero M, Aguilera A.
Mol Cell. 2010 Mar 12;37(5):690-701.

Regulation of Salmonella enterica pathogenicity island 1 by DNA adenine methylation.

López-Garrido J, Casadesús J.
Genetics. 2010 Mar;184(3):637-49.

The DamX protein of Escherichia coli and Salmonella enterica.
López-Garrido J, Casadesús J.
Gut Microbes. 2010 Jul;1(4):285-288.


Identification of the Salmonella enterica damX gene product, an inner membrane protein involved in bile resistance.
López-Garrido J, Cheng N, García-Quintanilla F, García-del Portillo F, Casadesús J.
J Bacteriol. 2010 Feb;192(3):893-5.

Replication fork breakage and re-start: New insights into Rad3/XPD-associated deficiencies.
Moriel-Carretero M, Aguilera A.
Cell Cycle. 2010 Aug 1;9(15):2958-62.

FACT prevents the accumulation of free histones evicted from transcribed chromatin and a subsequent cell cycle delay in G1.
Morillo-Huesca M, Maya D, Muñoz-Centeno MC, Singh RK, Oreal V, Reddy GU, Liang D, Géli V, Gunjan A, Chávez S.
PLoS Genet. 2010 May 20;6(5):e1000964.

A role in the regulation of transcription by light for RCO-1 and RCM-1, the Neurospora homologs of the yeast Tup1-Ssn6 repressor.
Olmedo M, Navarro-Sampedro L, Ruger-Herreros C, Kim SR, Jeong BK, Lee BU, Corrochano LM.
Fungal Genet Biol. 2010 Nov;47(11):939-52.

Regulation by blue light of the fluffy gene encoding a major regulator of conidiation in Neurospora crassa.

Olmedo M, Ruger-Herreros C, Corrochano LM.
Genetics. 2010 Mar;184(3):651-8.

A complex photoreceptor system mediates the regulation by light of the conidiation genes con-10 and con-6 in Neurospora crassa.
Olmedo M, Ruger-Herreros C, Luque EM, Corrochano LM.
Fungal Genet Biol. 2010 Apr;47(4):352-63.

A complete set of nascent transcription rates for yeast genes.
Pelechano V, Chávez S, Pérez-Ortín JE.
PLoS One. 2010 Nov 16;5(11):e15442.

Splitting of beta-carotene in the sexual interaction of Phycomyces.
Polaino S, Herrador MM, Cerdá-Olmedo E, Barrero AF.
Org Biomol Chem. 2010 Oct 7;8(19):4229-31.

The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors.
Rodríguez-Gil A, García-Martínez J, Pelechano V, Muñoz-Centeno Mde L, Geli V, Pérez-Ortín JE, Chávez S.
Nucleic Acids Res. 2010 Aug;38(14):4651-64.

Stimulation of bikaverin production by sucrose and by salt starvation in Fusarium fujikuroi.
Rodríguez-Ortiz R, Mehta BJ, Avalos J, Limón MC.
Appl Microbiol Biotechnol. 2010 Feb;85(6):1991-2000.

The interface between transcription and mRNP export: from THO to THSC/TREX-2.
Rondón AG, Jimeno S, Aguilera A.
Biochim Biophys Acta. 2010 Aug;1799(8):533-8.

Regulation of bacterial conjugation in microaerobiosis by host-encoded functions ArcAB and sdhABCD.
Serna A, Espinosa E, Camacho EM, Casadesús J.
Genetics. 2010 Apr;184(4):947-58.


BOOKS AND BOOK CHAPTERS

Of bacteria and bile.
Casadesús J, Hernández SB, Cota I, Ramos-Morales F.
In "The Lure of Bacterial Genetics: A Tribute to John Roth" (Maloy SR, Hughes KT, Casadesús J, eds.).
ASM Press, Washington DC, pp 153-162 (2010)

Light sensing.
Corrochano LM, Avalos J
In "Cellular and Molecular Biology of Filamentous Fungi" (Borkovich K, Ebbole, Momany M, eds.).
ASM Press, Washington DC, pp 417-441 (2010)

The Lure of Bacterial Genetics: A Tribute to John Roth.
Maloy SR, Hughes KT, Casadesús J., eds.
ASM Press, Washington DC (2010)




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Departamento de Genética  |  Universidad de Sevilla  |  Apartado 1095  |  41080 Sevilla España  |  +34 954 557 103  |  admgenetica@us.es